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Start Over Graduate Program Computer Science and Engineering Committee Member Padma Raghavan Committee Member Raj Acharya

1. Computational pipeline for the empirical detection of cleaved targets of small silencing RNAs using degradome sequencing data

open_access
Open Access
Author:
Addo-Quaye, Charles
Title:
Computational pipeline for the empirical detection of cleaved targets of small silencing RNAs using degradome sequencing data
Graduate Program:
Computer Science and Engineering
Keywords:
small RNAs microRNAs
File:
Download CAA154.pdf
Committee Members:
Webb Colby Miller, Dissertation Advisor/Co-Advisor
Webb Colby Miller, Committee Chair/Co-Chair
Michael Axtell, Committee Chair/Co-Chair
Ali Hurson, Committee Member
Raj Acharya, Committee Member
Padma Raghavan, Committee Member
John Edward Carlson, Committee Member

2. Minimizing End-To-End Interference in I/O Stacks Spanning Shared Multi-Level Buffer Caches

open_access
Open Access
Author:
Patrick, Christina M
Title:
Minimizing End-To-End Interference in I/O Stacks Spanning Shared Multi-Level Buffer Caches
Graduate Program:
Computer Science and Engineering
Keywords:
storage cache
interference
Multi-level buffer caches
performance
I/O
disk
cache
File:
Download Christina-Dissertation.pdf
Committee Members:
Mahmut Taylan Kandemir, Dissertation Advisor/Co-Advisor
Mahmut Taylan Kandemir, Committee Chair/Co-Chair
Mary Jane Irwin, Committee Member
Padma Raghavan, Committee Member
Brian Cameron, Committee Member
Raj Acharya, Committee Member

3. SAVE: A Scalable Archival and Visualization Environment for Large-Scale Scientific Computing Applications

open_access
Open Access
Author:
Li, Chuang
Title:
SAVE: A Scalable Archival and Visualization Environment for Large-Scale Scientific Computing Applications
Graduate Program:
Computer Science and Engineering
Keywords:
scientific computing
large data set
visualization
computational steering.
File:
Download thesis.pdf
Committee Members:
Paul E Plassman, Committee Chair/Co-Chair
Daniel Connell Haworth, Committee Member
Padma Raghavan, Committee Member
Hongyuna Zha, Committee Member
Raj Acharya, Committee Member

4. AUTOMATING ANALYSIS OF GENE CLUSTER EVOLUTION

open_access
Open Access
Author:
Song, Giltae
Title:
AUTOMATING ANALYSIS OF GENE CLUSTER EVOLUTION
Graduate Program:
Computer Science and Engineering
Keywords:
duplication
evolution
orthology
gene clusters
conversion
File:
Download giltae_song_dissertation.pdf
Committee Members:
Webb Colby Miller, Dissertation Advisor/Co-Advisor
Webb Colby Miller, Committee Chair/Co-Chair
Raj Acharya, Committee Member
Padma Raghavan, Committee Member
Ross Cameron Hardison, Committee Member
Yu Zhang, Committee Member

5. Information Fusion of Multiple Genomic Sensors for Clustering and Cis-Regulatory Element Identification

open_access
Open Access
Author:
Kasturi, Jyotsna
Title:
Information Fusion of Multiple Genomic Sensors for Clustering and Cis-Regulatory Element Identification
Graduate Program:
Computer Science and Engineering
Keywords:
Kullback-Leibler divergence
self-organizing map
multidimensional clustering
time-series
gene expression
motif finding
functional genomics
radial basis functions
information fusion
File:
Download JK_Thesis_05_2006.pdf
Committee Members:
Raj Acharya, Committee Chair/Co-Chair
Webb Colby Miller, Committee Member
Padma Raghavan, Committee Member
Ross Cameron Hardison, Committee Member
Francesca Chiaromonte, Committee Member

6. SCLABLE HYBRID SPARSE LINEAR SOLVERS

open_access
Open Access
Author:
Teranishi, Keita
Title:
SCLABLE HYBRID SPARSE LINEAR SOLVERS
Graduate Program:
Computer Science and Engineering
Keywords:
parallel computing
numerical linear algebra
scientific computing
sparse matrix computation
File:
Download mythesis.pdf
Committee Members:
Padma Raghavan, Committee Chair/Co-Chair
Mahmut Taylan Kandemir, Committee Member
Lyle Norman Long, Committee Member
Panagiotis Michaleris, Committee Member
Paul Plassmann, Committee Member
Raj Acharya, Committee Member

7. Clustering and Topic Discovery in Scientific Literature

open_access
Open Access
Author:
Bolelli, Levent
Title:
Clustering and Topic Discovery in Scientific Literature
Graduate Program:
Computer Science and Engineering
Keywords:
Clustering
Heterogeneous Data Clustering
Data Mining
Machine Learning
File:
Download LeventBolelli-Dissertation.pdf
Committee Members:
C Lee Giles, Committee Chair/Co-Chair
Wang Chien Lee, Committee Member
Padma Raghavan, Committee Member
Alan Maceachren, Committee Member
Raj Acharya, Committee Member

8. Content Addressable Data Management

open_access
Open Access
Author:
Nath, Partho
Title:
Content Addressable Data Management
Graduate Program:
Computer Science and Engineering
Keywords:
content addressable storage
content addressable parallel file system
internet suspend resume
File:
Download partho-nath.pdf
Committee Members:
Anand Sivasubramaniam, Committee Chair/Co-Chair
Bhuvan Urgaonkar, Committee Member
Padma Raghavan, Committee Member
Qian Wang, Committee Member
Michael A Kozuch, Committee Member
Raj Acharya, Committee Member

10. Multimethod Solvers: Algorithms, Application And Software

open_access
Open Access
Author:
Bhowmick, Sanjukta
Title:
Multimethod Solvers: Algorithms, Application And Software
Graduate Program:
Computer Science and Engineering
Keywords:
Iterative Linear Solvers
High Reliability
Composite Solvers
Adaptive Solvers
File:
Download mythesis.pdf
Committee Members:
Padma Raghavan, Committee Chair/Co-Chair
Mahmut Taylan Kandemir, Committee Member
Lyle Norman Long, Committee Member
Lois Curfman Mc Innes, Committee Member
Paul Plassmann, Committee Member
Raj Acharya, Committee Member

11. Uncovering hidden genomic features using computational approaches

open_access
Open Access
Author:
Chung, Wen-Yu
Title:
Uncovering hidden genomic features using computational approaches
Graduate Program:
Computer Science and Engineering
Keywords:
Computational Biology
Bioinformatics
Systems Biology
Molecular Evolution
File:
Download wychung-Dissertation.pdf
Committee Members:
Webb Colby Miller, Dissertation Advisor/Co-Advisor
Webb Colby Miller, Committee Chair/Co-Chair
Anton Nekrutenko, Committee Member
Raj Acharya, Committee Member
Padma Raghavan, Committee Member
Reka Z Albert, Committee Member

12. A Computational Framework For Inferring Structure, Function, and Evolution of Proteins

open_access
Open Access
Author:
Hong, Yoojin
Title:
A Computational Framework For Inferring Structure, Function, and Evolution of Proteins
Graduate Program:
Computer Science and Engineering
Keywords:
Proteins
Sequence Alignments
Twilight zone of Sequence Similarity
Position Specific Scoring Matrix
File:
Download 2010-PhD_dissertation_Yoojin_Hong.pdf
Committee Members:
Webb Colby Miller, Dissertation Advisor/Co-Advisor
Webb Colby Miller, Committee Chair/Co-Chair
Randen L Patterson, Committee Member
Padma Raghavan, Committee Member
Jayanth R Banavar, Committee Member
Damian B Van Rossum, Committee Member
Raj Acharya, Committee Member

13. Clustering Algorithms for Next-generation Sequencing Data from Heterogeneous Populations

open_access
Open Access
Author:
Prabhakara, Shruthi
Title:
Clustering Algorithms for Next-generation Sequencing Data from Heterogeneous Populations
Graduate Program:
Computer Science and Engineering
Keywords:
Clustering
Metagenomics
Mixture-modeling
Algorithms
File:
Download Shruthi_Prabhakara_Dissertation.pdf
Committee Members:
Raj Acharya, Dissertation Advisor/Co-Advisor
Webb Colby Miller, Committee Member
Mary Poss, Committee Member
Padma Raghavan, Committee Member

14. Information Processing and Semantic Correlation in Multimodal, Multilingual, Human Computer Interfaces

open_access
Open Access
Author:
Jung, Namsoon
Title:
Information Processing and Semantic Correlation in Multimodal, Multilingual, Human Computer Interfaces
Graduate Program:
Computer Science and Engineering
Keywords:
Multimodal human computer interaction (HCI)
Multilingualism
Semantic correlation
Object verification
File:
Download Dissertation_MultiLUM_20121121.pdf
Committee Members:
Raj Acharya, Dissertation Advisor/Co-Advisor
Raj Acharya, Committee Chair/Co-Chair
Padma Raghavan, Committee Member
Guoray Cai, Committee Member
Dr Alan M Mac Eachren, Committee Member
Dr Rajeev Sharma, Special Member

15. Fast Regularized Total Least Squares Methods With applications

open_access
Open Access
Author:
Lee, Geun Seop
Title:
Fast Regularized Total Least Squares Methods With applications
Graduate Program:
Computer Science and Engineering
Keywords:
Total Least Squares
Regularization
High Resolution Image Reconstruction
Newton method
File:
Download GeunseopLee-Dissertation.pdf
Committee Members:
Jesse Louis Barlow, Dissertation Advisor/Co-Advisor
Padma Raghavan, Committee Member
Dr Robert Collins, Committee Member
Vishal Monga, Committee Member
Raj Acharya, Committee Member

16. The Use of Cloud Computing in Health Care

open_access
Open Access
Author:
Rauscher, Richard L
Title:
The Use of Cloud Computing in Health Care
Graduate Program:
Computer Science and Engineering
Keywords:
cloud computing
health care
healthcare
virtual machines
VMMA
Bell-LaPadula
data leakage
File:
Download 2015-04-23_1855.pdf
Committee Members:
Raj Acharya, Dissertation Advisor/Co-Advisor
Raj Acharya, Committee Chair/Co-Chair
Padma Raghavan, Committee Member
Eugene Joseph Lengerich, Committee Member
Wang Chien Lee, Committee Member