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Start Over Graduate Program Integrative Biosciences Degree PHD Year 2016

1. genome and transcriptome architecture shaped by short tandem repeats: comparison of RNA-DNA differences, reverse transcription errors, and sequencing errors in short tandem repeats

open_access
Open Access
Author:
Fungtammasan, Arkarachai
Title:
genome and transcriptome architecture shaped by short tandem repeats: comparison of RNA-DNA differences, reverse transcription errors, and sequencing errors in short tandem repeats
Graduate Program:
Integrative Biosciences
Keywords:
microsatellites
common fragile sites
error correction model
sequencing error
reverse transcription error
RNA-DNA difference
File:
Download Fungtammasan_thesis.pdf
Committee Members:
Kateryna Dmytrivna Makova, Dissertation Advisor/Co-Advisor
Ross Cameron Hardison, Committee Member
Francesca Chiaromonte, Committee Member
Kristin Ann Eckert, Committee Member

2. Understanding Molecular Mechanisms of Gene Regulation using High Resolution ChIP-exo

open_access
Open Access
Author:
Reja, Rohit
Title:
Understanding Molecular Mechanisms of Gene Regulation using High Resolution ChIP-exo
Graduate Program:
Integrative Biosciences
Keywords:
ChIP-exo
gene regulation
ribosomal protein genes
architecture
File:
Download Thesis_Rohit_Reja.pdf
Committee Members:
Benjamin Franklin Pugh, Dissertation Advisor/Co-Advisor
Marylyn Deriggi Ritchie, Committee Chair/Co-Chair
Shaun A Mahony, Committee Member
Dr Yu Zhang, Special Member

3. USING LARGE-SCALE GENOMICS DATA TO UNDERSTAND THE GENETIC BASIS OF COMPLEX TRAITS

open_access
Open Access
Author:
Li, Ruowang
Title:
USING LARGE-SCALE GENOMICS DATA TO UNDERSTAND THE GENETIC BASIS OF COMPLEX TRAITS
Graduate Program:
Integrative Biosciences
Keywords:
Bioinformatics
Genomics
Statistics
Data Integration
Bayesian Network
Epistasis
File:
Download Ruowang_Dissertation.pdf
Committee Members:
Marylyn Deriggi Ritchie, Dissertation Advisor/Co-Advisor
Marylyn Deriggi Ritchie, Committee Chair/Co-Chair
Ross Cameron Hardison, Committee Member
Shaun A Mahony, Committee Member
Le Bao, Outside Member

4. Understanding the Role of a Hypermutator Switch in the Evolution of an Extremely Resistant Staphylococcus aureus Infection

open_access
Open Access
Author:
Raygoza Garay, Juan Antonio
Title:
Understanding the Role of a Hypermutator Switch in the Evolution of an Extremely Resistant Staphylococcus aureus Infection
Graduate Program:
Integrative Biosciences
Keywords:
Staphylococcus aureus
MRSA
Mutation rate
Phase variation
Genetic switch
Antibiotic Resistance
Vancomycin
endocarditis
microbiology
File:
Download Raygoza_Garay_Dissertation.pdf
Committee Members:
Santhosh Girirajan, Dissertation Advisor/Co-Advisor
Santhosh Girirajan, Committee Chair/Co-Chair
itsvan albert, Committee Member
Andrew Read, Committee Member
Jason Rasgon, Outside Member