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Author:

Ghosh, Sujana

Title:

Genome-wide studies of transcriptional responses in yeast (Saccharomyces cerevisiae)

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

transcription
microarrays
ChIP-exo

File:

Download Sujana_Ghosh_Thesis_2013.pdf

Committee Members:

Benjamin Franklin Pugh, Dissertation Advisor/Co-Advisor
Benjamin Franklin Pugh, Committee Chair/Co-Chair
Joseph C. Reese, Committee Member
David Scott Gilmour, Committee Member
Ross Cameron Hardison, Committee Member
Dr Debashis Ghosh, Committee Member
Scott Brian Selleck, Special Member

Author:

Reja, Rohit

Title:

Understanding Molecular Mechanisms of Gene Regulation using High Resolution ChIP-exo

Graduate Program:

Integrative Biosciences

Keywords:

ChIP-exo
gene regulation
ribosomal protein genes
architecture

File:

Download Thesis_Rohit_Reja.pdf

Committee Members:

Benjamin Franklin Pugh, Dissertation Advisor/Co-Advisor
Marylyn Deriggi Ritchie, Committee Chair/Co-Chair
Shaun A Mahony, Committee Member
Dr Yu Zhang, Special Member

Author:

Niu, Ben

Title:

GENOMIC PROFILING OF THE CONSTITUTIVE ANDROSTANE RECEPTOR IN RODENT MODELS REVEAL NOVEL TUMORIGENESIS TARGETS AND SPECIES VARIATIONS

Graduate Program:

Cell and Developmental Biology

Keywords:

Constitutive androstane receptor
CAR
ChIP-seq
ChIP-exo
Phenobarbital
PB
HCC
Carcinogenesis

File:

Download Ben_Niu_thesis_final_3.pdf

Committee Members:

Curtis John Omiecinski, Dissertation Advisor/Co-Advisor
Curtis John Omiecinski, Committee Chair/Co-Chair
Istvan Albert, Committee Member
Jack Vanden Heuvel, Committee Member
Joshua D Lambert, Outside Member
Kumble Sandeep Prabhu, Committee Member

Author:

Yamada, Naomi

Title:

Computational methods to characterize protein-DNA interactions in ChIP-exo data

Graduate Program:

Bioinformatics and Genomics

Keywords:

protein-DNA interactions
regulatory complexes
ChIP-exo
ChIP-seq
transcription factors
protein-DNA binding event detection

File:

Download NaomiYamada_Dissertation.final.pdf

Committee Members:

Shaun Mahony, Dissertation Advisor/Co-Advisor
Shaun Mahony, Committee Chair/Co-Chair
Benjamin Franklin Pugh, Committee Member
Ross Cameron Hardison, Committee Member
Qunhua Li, Outside Member
George H Perry, Program Head/Chair