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Author:

Costanzo, Alessandra

Title:

Regulation of the Extracytoplasmic Stress Factor Sigma E by the Alarmone ppGpp in Escherichia coli

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

sigma factor competition
Extracytoplasmic stress response
ppGpp

File:

Download ACostanzo-Dissertation.pdf

Committee Members:

Sarah Ellen Ades, Committee Chair/Co-Chair
Stephen John Knabel, Committee Member
Katsuhiko Murakami, Committee Member
B Tracy Nixon, Committee Member
Allen T Phillips, Committee Member

Author:

Nelms, Brian Lewis

Title:

SUPPRESSION OF egl-13 SOX DOMAIN MUTANTS REVEALS A NOVEL FUNCTION FOR SOME MEIOTIC GENES

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

C. elegans
egl-13
him-8
uterine
development

File:

Download PhD_eTD_BLN_August_2006.pdf

Committee Members:

Wendy Hanna Rose, Committee Chair/Co-Chair
Zhi Chun Lai, Committee Member
Pamela J Mitchell, Committee Member
David Scott Gilmour, Committee Member
Richard W Ordway, Committee Member

Author:

Gekonge, Bethsebah Nyankomba

Title:

MEMBRANE ASYMMETRY IN APOPTOTIC CELLS, SIGNALS ASSOCIATED WITH PHAGOCYTOSIS AND THEIR IMPACT ON HIV TRANSCRIPTION

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

MACROPHAGE
PHOSPHATIDYLSERINE
APOPTOSIS
PHAGOCYTOSIS
HIV

File:

Download ThesisMaster.pdf

Committee Members:

Andrew Thomas Henderson, Committee Chair/Co-Chair
Robert Allen Schlegel, Committee Chair/Co-Chair
Andrea Marie Mastro, Committee Member
Pamela Hankey Giblin, Committee Member

Author:

Sermwittayawong, Decha

Title:

MECHANISMS OF THE SAGA COACTIVATOR COMPLEX IN REGULATION OF GENE TRANSCRIPTION

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

Gcn5
competition
Spt3
TBP
Spt8
SAGA
bromodomain

File:

Download ThesisMaster_071906c.pdf

Committee Members:

Song Tan, Committee Chair/Co-Chair
Jerry L Workman, Committee Member
Benjamin Franklin Pugh, Committee Member
Joseph C. Reese, Committee Member
Robert Paulson, Committee Member
Juliette T J Lecomte, Committee Member

Author:

Wang, Hao

Title:

Prediction, Validation and Targeted Interference of Erythroid Regulatory Modules

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

regulatory potential
gene regulation
conserved noncoding sequences
transcription factor binding sites

File:

Download HW-Thesis.pdf

Committee Members:

Ross Cameron Hardison, Committee Chair/Co-Chair
Webb Colby Miller, Committee Member
Pamela J Mitchell, Committee Member
Robert Paulson, Committee Member
Anton Nekrutenko, Committee Member

Author:

Li, Hui

Title:

ORGANIZATION AND FUNCTION OF CHLOROSOME PROTEINS IN THE GREEN SULFUR BACTERIUM CHLOROBIUM TEPIDUM

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

green sulfur bacteria
chlorosome proteins

File:

Download Hui_Li_thesis.pdf

Committee Members:

Donald Ashley Bryant, Committee Chair/Co-Chair
John H Golbeck, Committee Member
Teh Hui Kao, Committee Member
Juliette T J Lecomte, Committee Member

Author:

Biddle, Jennifer Frances

Title:

Microbial populations and processes in subseafloor marine environments

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

microbiology
biogeochemistry
archaea
ocean drilling program
FISH-SIMS
metagenomics

File:

Download JFBiddle_Thesis_2006.pdf

Committee Members:

Jean Elnora Brenchley, Committee Chair/Co-Chair
Christopher Howard House, Committee Member
James Gregory Ferry, Committee Member
Allen T Phillips, Committee Member
Ming Tien, Committee Member

Author:

Durant, Melissa

Title:

GENOME-WIDE ROLE OF HISTONE ACETYLTRANSFERASES AND CHROMATIN REGULATORS IN REGULATING YEAST CHROMATIN AND GENE TRANSCRIPTION

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

chromatin
gene regulation
transcription factor
histone acetylation
microarray

File:

Download Durant_Thesis.pdf

Committee Members:

Benjamin Franklin Pugh, Committee Chair/Co-Chair
Ross Cameron Hardison, Committee Member
Emine Koc, Committee Member
Song Tan, Committee Member
Naomi S Altman, Committee Member

Author:

Balasubramanian, Ramakrishnan

Title:

Biogenesis, Assembly, and Function of Iron-Sulfur Clusters in Photosystem I

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

electron transfer
iron-sulfur clusters
cyanobacteria
Biogenesis
Photosystem I

File:

Download Ramathesis.pdf

Committee Members:

John H Golbeck, Committee Chair/Co-Chair
Donald Ashley Bryant, Committee Chair/Co-Chair
B Tracy Nixon, Committee Member
Squire J Booker, Committee Member
Juliette T J Lecomte, Committee Member

Author:

Shipkowski, Stephanie Ann

Title:

Alternative Functions for the Beta-Galactosidases of Microorganisms Found in Environments Without Lactose

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

beta-galactosidases
glycoside hydrolase family 42
Bacillus
gene synteny
arabinogalactan

File:

Download Shipkowski.pdf

Committee Members:

Jean Elnora Brenchley, Committee Chair/Co-Chair
Maryann Victoria Bruns, Committee Member
Allen T Phillips, Committee Member
Ming Tien, Committee Member
James Gregory Ferry, Committee Member

Author:

Tyagarajan, Shiva

Title:

JC Virus Early Proteins Regulate RB-E2F Complexes and Promote Progression of Cells into S Phase.

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

JCV
E2F
Cell Cycle
T125 phosphorylation site

File:

Download Thesis.pdf

Committee Members:

Richard John Frisque, Committee Chair/Co-Chair
David Scott Gilmour, Committee Member
Avery August, Committee Member
Michael Teng, Committee Member
Andrew Thomas Henderson, Committee Member

Author:

Ruebush, Shane Stanton

Title:

Biochemical Characterization of Membrane Proteins in Shewanella oneidensis involved in dissimilatory iron reduction

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

Shewanella oneidensis
membrane proteins
biochemistry
dissimilatory iron reduction

File:

Download Shane_Ruebush_PhD_Dissertation.pdf

Committee Members:

Ming Tien, Committee Chair/Co-Chair
Squire J Booker, Committee Member
Susan Louise Brantley, Committee Member
Jean Elnora Brenchley, Committee Member
Teh Hui Kao, Committee Member

Author:

Shimizu, Takeshi

Title:

The Drosophila Model of Cancer: Characterization of a Conserved Tumour Suppressor and Its Role in the Control of Cell Proliferation and Apoptosis

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

cancer biology
tumor suppressor
wts
lats
hpo
mats
Drosophila

File:

Download VersionR04.pdf

Committee Members:

Zhi Chun Lai, Committee Chair/Co-Chair
Carol V Gay, Committee Member
Richard W Ordway, Committee Member
Robert Paulson, Committee Member
Wendy Hanna Rose, Committee Member

Author:

Shia, Wei-Jong

Title:

FUNCTIONAL CHARACTERIZATION OF THE SAS (SOMETHING ABOUT SILENCING) COMPLEX IN BUDDING YEAST SACCHAROMYCES CEREVISIAE

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

SAS
H2A.Z
anti-silencing
HAT

File:

Download WJShia_Thesis.pdf

Committee Members:

Jerry L Workman, Committee Chair/Co-Chair
Joseph C. Reese, Committee Chair/Co-Chair
David Scott Gilmour, Committee Member
Hong Ma, Committee Member
Song Tan, Committee Member

Author:

Fan, Xiaoxuan

Title:

ANNEXINS I AND II VERSUS β2-GLYCOPROTEIN 1 AS BRIDGING MOLECULES IN THE PHAGOCYTOSIS OF APOPTOTIC CELLS

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

β2-glycoprotein 1
annexins
phosphatidylserine
phagocytosis
T lymphocytes

File:

Download ThesisMaster2.pdf

Committee Members:

Robert Allen Schlegel, Committee Chair/Co-Chair
Andrew Thomas Henderson, Committee Member
Avery August, Committee Member
Andrea Marie Mastro, Committee Member
Mary J Kennett, Committee Member