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Author:

Wang, Hao

Title:

Prediction, Validation and Targeted Interference of Erythroid Regulatory Modules

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

regulatory potential
gene regulation
conserved noncoding sequences
transcription factor binding sites

File:

Download HW-Thesis.pdf

Committee Members:

Ross Cameron Hardison, Committee Chair/Co-Chair
Webb Colby Miller, Committee Member
Pamela J Mitchell, Committee Member
Robert Paulson, Committee Member
Anton Nekrutenko, Committee Member

Author:

Gotea, Valer

Title:

CONTRIBUTION OF TRANSPOSABLE ELEMENTS TO GENOMIC NOVELTY: A COMPUTATIONAL APPROACH

Graduate Program:

Biology

Keywords:

transposable elements
exaptation
proteome
Alu elements
transcription factor binding sites
ScrapYard database

File:

Download gotea_thesis_final.pdf

Committee Members:

Wojciech Makalowski, Committee Chair/Co-Chair
Stephen Wade Schaeffer, Committee Member
Kateryna Dmytrivna Makova, Committee Member
Piotr Berman, Committee Member

Author:

Kakumanu, Akshay

Title:

COMPUTATIONAL MODELLING OF SEQUENCE FEATURES DRIVING TRANSCRIPTION FACTOR BINDING IN NEURONAL REPROGRAMMING

Graduate Program:

Integrative Biosciences

Keywords:

discriminative features
transcription factor binding sites
DNaseI hypersensitive sites
motif discovery
cellular reprogramming
transcription factor binding
spinal motor neurons
Ngn2
Ascl1
Lhx3
Isl1

File:

Download AkshayKakumanu_Dissertation_FINAL_11_22_2017.pdf

Committee Members:

Shaun A Mahony, Dissertation Advisor/Co-Advisor
Shaun A Mahony, Committee Chair/Co-Chair
Benjamin Franklin Pugh, Committee Member
Ross Cameron Hardison, Committee Member
Yu Zhang, Outside Member
Esteban O. Mazzoni, Committee Member