Keyword: RNA - Blacklight Search Results

Open Access

Author:: Proctor, David James
Title:: Studies of the Molecular Origins of Thermodynamic Stability in RNA Secondary Structure
Graduate Program:: Chemistry
Keywords:: RNA
biophysics
structure
thermodynamics
File:: Download thesis.pdf
Committee Members:: Philip C. Bevilacqua, Committee Chair/Co-Chair
Juliette T J Lecomte, Committee Member
George I Makhatadze, Committee Member
Paul Lee Babitzke, Committee Member

Open Access

Author:: Moody, Ellen Marie
Title:: Stability in Nucleic Acid Hairpins: 1. Molecular Determinants of Cooperativity and 2. Linkage between Proton Binding and Folding
Graduate Program:: Chemistry
Keywords:: RNA
DNA
pKa shifting
cooperativity
expandability
thermodynamics
File:: Download EMM_thesis.pdf
Committee Members:: Philip C. Bevilacqua, Committee Chair/Co-Chair
Christopher Falzone, Committee Member
Juliette T J Lecomte, Committee Member
James Gregory Ferry, Committee Member

Open Access

Author:: Sokoloski, Joshua Edward
Title:: Calorimetric Studies of Site-Specific Ligand Binding By RNA
Graduate Program:: Chemistry
Keywords:: Isothermal Titration Calorimetry
RNA
File:: Download JES_Sokoloski_Dissertation_F11_Corrected.pdf
Committee Members:: Philip C. Bevilacqua, Dissertation Advisor/Co-Advisor
Philip C. Bevilacqua, Committee Chair/Co-Chair
Scott A Showalter, Committee Member
David Lawrence Allara, Committee Member
Song Tan, Committee Member

Open Access

Author:: Blose, Joshua Matthew
Title:: ELUCIDATING THERMODYNAMIC RELATIONSHIPS IN THE RNA STRUCTURAL HIERARCHY: MOLECULAR ORIGINS OF STABILITY
Graduate Program:: Chemistry
Keywords:: Cooperative Folding
Thermophilic Adaptation
Tetraloop
RNA
Nonlinear Poisson-Boltzmann
NLPB
Electrostatics
File:: Download JMB_Dissertation_082009.pdf
Committee Members:: Philip C. Bevilacqua, Dissertation Advisor/Co-Advisor
Philip C. Bevilacqua, Committee Chair/Co-Chair
Sharon Hammes Schiffer, Committee Member
Tae Hee Lee, Committee Member
Kenneth Charles Keiler, Committee Member

Open Access

Author:: Heinicke, Laurie Ann
Title:: Regulation of the protein kinase PKR by higher-order RNA secondary and tertiary structures
Graduate Program:: Chemistry
Keywords:: innate immune response
kinase
RNA
PKR
File:: Download Heinicke_04_26_10_Thesis.pdf
Committee Members:: Philip C. Bevilacqua, Dissertation Advisor/Co-Advisor
Philip C. Bevilacqua, Committee Chair/Co-Chair
Christine Dolan Keating, Committee Member
Scott A Showalter, Committee Member
Andrey S Krasilnikov, Committee Member

Open Access

Author:: Mullen, Melissa Ann
Title:: Arabidopsis thaliana under stress: Functional implications of G-quadruplex and non-coding RNA structure
Graduate Program:: Chemistry
Keywords:: RNA
Arabidopsis
G-quadruplex
drought stress
File:: Download Mullen_Thesis_071511.pdf
Committee Members:: Philip C. Bevilacqua, Dissertation Advisor/Co-Advisor
Philip C. Bevilacqua, Committee Chair/Co-Chair
Sarah Mary Assmann, Committee Chair/Co-Chair
Christine Dolan Keating, Committee Member
David D Boehr, Committee Member
Paul Lee Babitzke, Committee Member

Open Access

Author:: Siegfried, Nathan A.
Title:: Folding Cooperativity and Its Influence on pKa Shifting in Nucleic Acids
Graduate Program:: Chemistry
Keywords:: pKa shift
RNA
DNA
nucleic acids
cooperativity
acid base catalysis
File:: Download Siegfried_Thesis.pdf
Committee Members:: Philip C. Bevilacqua, Dissertation Advisor/Co-Advisor
Philip C. Bevilacqua, Committee Chair/Co-Chair
Squire J Booker, Committee Member
Scott A Showalter, Committee Member
Katsuhiko Murakami, Committee Member

Open Access

Author:: Veeraraghavan, Narayanan
Title:: CATALYTIC AND STRUCTURAL ROLES OF NUCLEOBASES AND METAL IONS IN SMALL RIBOZYMES: NEW INSIGHTS FROM CALCULATIONS AND COMPARISON TO EXPERIMENTS
Graduate Program:: Integrative Biosciences
Keywords:: NLPB
reverse GU wobble
wobble
ribozyme
RNA
molecular dynamics
HDV
File:: Download NVeeraraghavan-eTD.pdf
Committee Members:: Prof Sharon Hammes Schiffer, Dissertation Advisor/Co-Advisor
Philip C. Bevilacqua, Committee Chair/Co-Chair
Sharon Hammes Schiffer, Committee Chair/Co-Chair
William George Noid, Committee Member
Andrey S Krasilnikov, Committee Member
Reka Z Albert, Committee Member

Open Access

Author:: Molden, Rosalynn Conniff
Title:: Enhancing RNA catalysis through compartmentalization
Graduate Program:: Chemistry
Keywords:: model cell
aqueous two-phase systems
hammerhead ribozyme kinetics
RNA
cellular compartmentalization
File:: Download ThesisETD.pdf
Committee Members:: Christine Dolan Keating, Thesis Advisor/Co-Advisor
Christine Dolan Keating, Thesis Advisor/Co-Advisor

Open Access

Author:: Reigh, Stephanie Ann
Title:: Syn Bases: Their Prevalence, Relevance, and Functional Utility in Functional RNA
Graduate Program:: Chemistry
Keywords:: RNA
File:: Download Reigh_Final_Thesis.pdf
Committee Members:: Philip C. Bevilacqua, Thesis Advisor/Co-Advisor
Philip C. Bevilacqua, Thesis Advisor/Co-Advisor

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