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Author:

Ratan, Aakrosh

Title:

ASSEMBLY ALGORITHMS FOR NEXT GENERATION SEQUENCE DATA

Graduate Program:

Computer Science and Engineering

Keywords:

next-generation sequencing
genome assembly
algorithms

File:

Download dissertation.pdf

Committee Members:

Webb Colby Miller, Dissertation Advisor/Co-Advisor
Webb Colby Miller, Committee Chair/Co-Chair
Piotr Berman, Committee Member
Stephan Schuster, Committee Member
Raj Acharya, Committee Member

Author:

Sun, Bingjun

Title:

MINING, INDEXING, AND SEARCH APPROACHES TO ENTITY AND GRAPH INFORMATION RETRIEVAL FOR CHEMOINFORMATICS

Graduate Program:

Computer Science and Engineering

Keywords:

Information retrieval
information extraction
entity tagging
entity search
query model
graph mining
graph indexing
graph search
feature selection
Chemoinformatics

File:

Download BingjunSun-Dissertation.pdf

Committee Members:

C Lee Giles, Committee Chair/Co-Chair
Prasenjit Mitra, Committee Chair/Co-Chair
Jesse Louis Barlow, Committee Member
Robert T Collins, Committee Member
Bing Li, Committee Member

Author:

Addo-Quaye, Charles

Title:

Computational pipeline for the empirical detection of cleaved targets of small silencing RNAs using degradome sequencing data

Graduate Program:

Computer Science and Engineering

Keywords:

small RNAs microRNAs

File:

Download CAA154.pdf

Committee Members:

Webb Colby Miller, Dissertation Advisor/Co-Advisor
Webb Colby Miller, Committee Chair/Co-Chair
Michael Axtell, Committee Chair/Co-Chair
Ali Hurson, Committee Member
Raj Acharya, Committee Member
Padma Raghavan, Committee Member
John Edward Carlson, Committee Member

Author:

Hsu, Chih-Hao

Title:

INFERENCE OF ORTHOLOGS, WHILE CONSIDERING GENE CONVERSION, TO EVALUATE WHOLE-GENOME MULTIPLE SEQUENCE ALIGNMENTS

Graduate Program:

Computer Science and Engineering

Keywords:

Evolution
Gene conversion
Orthology
Multiple-Sequence Alignment

File:

Download Dissertation.pdf

Committee Members:

Webb Colby Miller, Dissertation Advisor/Co-Advisor
Webb Colby Miller, Committee Chair/Co-Chair
Raj Acharya, Committee Member
Wang Chien Lee, Committee Member
Ross Cameron Hardison, Committee Member

Author:

Lee, Chi Keung

Title:

Efficient Information Access for Location-Based Services in Mobile Environments

Graduate Program:

Computer Science and Engineering

Keywords:

Location-Based Services
Database
Mobile Computing

File:

Download thesis-cklee-jul21.pdf

Committee Members:

Wang Chien Lee, Dissertation Advisor/Co-Advisor
Wang Chien Lee, Committee Chair/Co-Chair
Donna Jean Peuquet, Committee Member
Piotr Berman, Committee Member
Daniel Kifer, Committee Member

Author:

King, David Holliday

Title:

RETROFITTING PROGRAMS FOR COMPLETE SECURITY MEDIATION

Graduate Program:

Computer Science and Engineering

Keywords:

program analysis
mediation statements

File:

Download thesis.pdf

Committee Members:

Trent Ray Jaeger, Dissertation Advisor/Co-Advisor
Trent Ray Jaeger, Committee Chair/Co-Chair
John Joseph Hannan, Committee Chair/Co-Chair
Patrick Drew Mcdaniel, Committee Member
Martin Furer, Committee Member
Piotr Berman, Committee Member
Stephen George Simpson, Committee Member

Author:

Jean, Evens

Title:

Sensor Network Interoperability and Reconfiguration through Mobile Agents

Graduate Program:

Computer Science and Engineering

Keywords:

mobile agents
sensor network
FPGA

File:

Download SubmittedThesis.pdf

Committee Members:

Dr Ali Hurson, Dissertation Advisor/Co-Advisor
Dr Ali Hurson, Committee Chair/Co-Chair
Dr Robert T Collins, Committee Chair/Co-Chair
Vijaykrishnan Narayanan, Committee Member
Ling Rothrock, Committee Member
Dr Yu (Cathy) Jiao, Committee Member

Author:

Rowaihy, Hosam

Title:

Resource Management Issues in Wireless Sensor Networks

Graduate Program:

Computer Science and Engineering

Keywords:

Resource Management
Sensor Networks
Sensor Assignment

File:

Download rowaihy_dissertation.pdf

Committee Members:

Thomas La Porta, Dissertation Advisor/Co-Advisor
Thomas F Laporta, Committee Chair/Co-Chair
Guohong Cao, Committee Member
Tracy Mullen, Committee Member
Sofya Raskhodnikova, Committee Member

Author:

Sustersic, John Phillip

Title:

The Control, Communication, and Computation Language (C3L): Completing the Design Cycle in Complex Distributed System Development

Graduate Program:

Computer Science and Engineering

Keywords:

Parallelizing Compiler
Distributed Systems Programming
Formal Semantics
Embedded Systems
Computer Languages
Mine Counter Measures

File:

Download sustersic_thesis.pdf

Committee Members:

Mahmut Taylan Kandemir, Dissertation Advisor/Co-Advisor
Mahmut Taylan Kandemir, Committee Chair/Co-Chair
Shashi Phoha, Committee Member
Mary Jane Irwin, Committee Member
Robert Nickel, Committee Member

Author:

Lim, Jaehyun

Title:

AN ULTRA-COMPACT AND LOW-POWER OVEN CONTROLLED CRYSTAL OSCILLATOR DESIGN FOR PRECISION-TIMING APPLICATIONS

Graduate Program:

Computer Science and Engineering

Keywords:

crystal oscillator
oven controlled crystal oscillator
OCXO
quartz resonator

File:

Download dissertation_Lim.pdf

Committee Members:

Kyusun Choi, Dissertation Advisor/Co-Advisor
Kyusun Choi, Committee Chair/Co-Chair
Lee David Coraor, Committee Member
Dr Yuan Xie, Committee Member
John Douglas Mitchell, Committee Member
Thomas Nelson Jackson, Committee Member

Author:

Irick, Kevin Maurice

Title:

A Configurable Platform for Sensor and Image Processing

Graduate Program:

Computer Science and Engineering

Keywords:

Image Processing
Hardware Acceleration
FPGA

File:

Download Dissertation_Final.pdf

Committee Members:

Vijaykrishnan Narayanan, Dissertation Advisor/Co-Advisor
Vijaykrishnan Narayanan, Committee Chair/Co-Chair
Mary Jane Irwin, Committee Member
Yuan Xie, Committee Member
Vittaldas V Prabhu, Committee Member

Author:

Shao, Min

Title:

Security and Privacy Support for Wireless Sensor Networks

Graduate Program:

Computer Science and Engineering

Keywords:

sensor networks
privacy
security

File:

Download MinShao-Dissertation.pdf

Committee Members:

Guohong Cao, Committee Chair/Co-Chair
Tom F. La Porta, Committee Member
Bhuvan Urgaonkar, Committee Member
Sencun Zhu, Committee Member
Heng Xu, Committee Member

Author:

Patankar, Pushkar Deepak

Title:

Adaptive Social Networking With Applications To Security

Graduate Program:

Computer Science and Engineering

Keywords:

Social Networks
Peer-to-Peer Systems
Unstructured Networks
Botnets

File:

Download Pushkar-Dissertation.pdf

Committee Members:

Chitaranjan Das, Dissertation Advisor/Co-Advisor
George Kesidis, Committee Chair/Co-Chair
Chitaranjan Das, Committee Chair/Co-Chair
Sencun Zhu, Committee Member
David Jonathan Miller, Committee Member

Author:

Datta, Ritendra

Title:

Semantics and Aesthetics Inference for Image Search: Statistical Learning Approaches

Graduate Program:

Computer Science and Engineering

Keywords:

image aesthetics
automatic annotation
image search
statistical learning

File:

Download datta-dissertation1.pdf

Committee Members:

James Z Wang, Dissertation Advisor/Co-Advisor
James Z Wang, Committee Chair/Co-Chair
Jia Li, Committee Chair/Co-Chair
Robert Collins, Committee Member
C Lee Giles, Committee Member
David Miller, Committee Member
Bhuvan Urgaonkar, Committee Member

Author:

Ganta, Srivatsava Ranjit

Title:

Fusion-Aware Privacy and Warehousing for Healthcare Databases

Graduate Program:

Computer Science and Engineering

Keywords:

Information Fusion
Anonymization
Privacy
Auxiliary Information

File:

Download thesis.pdf

Committee Members:

Raj Acharya, Dissertation Advisor/Co-Advisor
Raj Acharya, Committee Chair/Co-Chair
Adam Smith, Committee Chair/Co-Chair
Ganapati P Patil, Committee Member
Robert Collins, Committee Member

Author:

Chaitanya, Shiva

Title:

ADDRESSING PERFORMANCE CHALLENGES IN SECURE STORAGE SYSTEMS

Graduate Program:

Computer Science and Engineering

Keywords:

Storage Security
Performance

File:

Download shiva_thesis.pdf

Committee Members:

Anand Subramaniam, Dissertation Advisor/Co-Advisor
Anand Sivasubramaniam, Committee Chair/Co-Chair
Bhuvan Urgaonkar, Committee Chair/Co-Chair
Patrick Drew Mcdaniel, Committee Member
Qian Wang, Committee Member

Author:

Lee, Seungkyu

Title:

Symmetry Group Extraction from Multidimensional Real Data

Graduate Program:

Computer Science and Engineering

Keywords:

gait
shape matching
reflection
rotation
symmetry group
symmetry
human body motion analysis

File:

Download SeungkyuLee-Dissertation_final7.pdf

Committee Members:

Yanxi Liu, Dissertation Advisor/Co-Advisor
Yanxi Liu, Committee Chair/Co-Chair
Robert Collins, Committee Chair/Co-Chair
Jesse Louis Barlow, Committee Member
Karl Maxim Newell, Committee Member
Stephen Jacob Piazza, Committee Member
Raj Acharya, Committee Member

Author:

Ertekin, Seyda

Title:

LEARNING IN EXTREME CONDITIONS: ONLINE AND ACTIVE LEARNING WITH MASSIVE, IMBALANCED AND NOISY DATA

Graduate Program:

Computer Science and Engineering

Keywords:

Machine Learning
Online Learning
Active Learning
Support Vector Machines
Classification
Data Mining

File:

Download SeydaErtekin_Dissertation.pdf

Committee Members:

C Lee Giles, Dissertation Advisor/Co-Advisor
C Lee Giles, Committee Chair/Co-Chair
Leon Bottou, Committee Member
Raj Acharya, Committee Member
Jia Li, Committee Member
Tracy Mullen, Committee Member

Author:

Chung, Wen-Yu

Title:

Uncovering hidden genomic features using computational approaches

Graduate Program:

Computer Science and Engineering

Keywords:

Computational Biology
Bioinformatics
Systems Biology
Molecular Evolution

File:

Download wychung-Dissertation.pdf

Committee Members:

Webb Colby Miller, Dissertation Advisor/Co-Advisor
Webb Colby Miller, Committee Chair/Co-Chair
Anton Nekrutenko, Committee Member
Raj Acharya, Committee Member
Padma Raghavan, Committee Member
Reka Z Albert, Committee Member

Author:

Wang, Xinran

Title:

Protecting software from attack and theft via program analysis

Graduate Program:

Computer Science and Engineering

Keywords:

software security
software plagiarism detection
malware detection
program analysis

File:

Download Xinran-Dissertation.pdf

Committee Members:

Sencun Zhu, Dissertation Advisor/Co-Advisor
Sencun Zhu, Committee Chair/Co-Chair
Peng Liu, Committee Member
Guohong Cao, Committee Member
Zan Huang, Committee Member

Author:

Kim, Youngjae

Title:

DESIGN CHALLENGES ON ENTERPRISE-SCALE STORAGE SYSTEMS EMPLOYING HARD DRIVES AND NAND FLASH BASED SOLID-STATE DRIVES

Graduate Program:

Computer Science and Engineering

Keywords:

Storage Systems
Flash Memory

File:

Download YoungjaeKim-Dissertation.pdf

Committee Members:

Dr Anand Sivasubramaniam And Dr Bhuvan Urgaonkar, Dissertation Advisor/Co-Advisor
Anand Sivasubramaniam, Committee Chair/Co-Chair
Bhuvan Urgaonkar, Committee Chair/Co-Chair
Prasenjit Mitra, Committee Member
Qian Wang, Committee Member
Raj Acharya, Committee Member

Author:

Song, Yang

Title:

Machine Learning for Text Mining: Classification, Retrieval and Recommendation

Graduate Program:

Computer Science and Engineering

Keywords:

classification
machine learning
text classification
information retrieval
clustering
recommendation

File:

Download yangsong_dissertation.pdf

Committee Members:

C Lee Giles, Dissertation Advisor/Co-Advisor
C Lee Giles, Committee Chair/Co-Chair
Wang Chien Lee, Committee Member
Jia Li, Committee Member
Jesse Louis Barlow, Committee Member
Bing Li, Committee Member

Author:

Yin, Zhaozheng

Title:

Persistent Object Tracking by Figure-Ground Segmentation

Graduate Program:

Computer Science and Engineering

Keywords:

motion segmentation
figure-ground segmentation
feature selection and fusion
tracking failure recovery
object tracking

File:

Download ZhaozhengYinPhDThesis2009.pdf

Committee Members:

Robert T Collins, Dissertation Advisor/Co-Advisor
Robert T Collins, Committee Chair/Co-Chair
Jesse Louis Barlow, Committee Member
Yanxi Liu, Committee Member
David Miller, Committee Member