Search

Author:

Hollingshead, Brett David

Title:

In vitro and in vivo analysis of aryl hydrocarbon receptor regulation by the hepatitis B virus X-associated protein 2

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

aryl hydrocarbon receptor
XAP2
HSP90
gene regulation
chaperone proteins
AIP

File:

Download Hollingshead_thesis.pdf

Committee Members:

Gary H Perdew, Committee Chair/Co-Chair
Jeffrey Maurice Peters, Committee Member
Ross Cameron Hardison, Committee Member
Ming Tien, Committee Member
Scott Trent Feldman, Committee Member

Author:

Venters, Bryan Jacob

Title:

HIGH-RESOLUTION GENOME-WIDE ORGANIZATION OF THE YEAST TRANSCRIPTION MACHINERY

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

ChIP-chip
Tiling microarrays
Pre-initiation complex
Chromatin
Saccharomyces
Mot1

File:

Download 080724_Venters_Thesis.pdf

Committee Members:

Benjamin Franklin Pugh, Committee Chair/Co-Chair
Joseph C. Reese, Committee Member
Ross Cameron Hardison, Committee Member
David Scott Gilmour, Committee Member
Naomi S Altman, Committee Member

Author:

Abebe, Demesew F

Title:

EVOLUTION AND ACTIVITY OF AN ERYTHROID CIS-REGULATORY MODULE IN MULTIPLE MAMMALIAN LINEAGES

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

boreoeutheria
Motif constraint
CIS-REGULATORY MODULE
GATA1

File:

Download DA-Thesis-Final.pdf

Committee Members:

Ross Cameron Hardison, Thesis Advisor/Co-Advisor
Ross Cameron Hardison, Thesis Advisor/Co-Advisor

Author:

Blankenberg, Daniel James

Title:

Galaxy, a web-based framework for the integration of genome analysis

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

Sequence Analysis
Genome
Databases
Algorithms
Molecular Sequence Data
Software

File:

Download blankenberg_Galaxy_a_web-based_framework_for_the_integration_of_genome_analysis.pdf

Committee Members:

Anton Nekrutenko, Dissertation Advisor/Co-Advisor
Anton Nekrutenko, Committee Chair/Co-Chair
Webb Colby Miller, Committee Member
Ross Cameron Hardison, Committee Member
Stephan Schuster, Committee Member
Andrey S Krasilnikov, Committee Member

Author:

Wu, Dai-Chen

Title:

FROM EXPLORING ROLES OF SIGNALS IN STRESS ERYTHROPOIESIS TO IN VITRO EXPANDING STRESS ERYTHROID PROGENITORS THAT ALLEVIATE ANEMIA

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

Hedgehog
BMP4
hypoxia
hematopoiesis
erythropoiesis
GDF15
anemia
stem cell

File:

Download DC_Wu_Dissertation_Final_renumbered.pdf

Committee Members:

Robert Paulson, Dissertation Advisor/Co-Advisor
Robert Paulson, Committee Member
Douglas Cavener, Committee Member
David Scott Gilmour, Committee Member
Pamela Hankey Giblin, Committee Member
Ross Cameron Hardison, Committee Member

Author:

Hollingshead, Holly Elizabeth

Title:

Ligand Activation of Peroxisome Proliferator-Activated Receptor Beta Induces Terminal Differentiation and Attenuates Colon Cancer

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

PPAR
colon cancer
colon

File:

Download Hollingshead_Thesis_final.pdf

Committee Members:

Jeffrey Maurice Peters, Committee Chair/Co-Chair
Gary H Perdew, Committee Member
Richard John Frisque, Committee Member
Ross Cameron Hardison, Committee Member
David John Vandenbergh, Committee Member

Author:

Wang, Hao

Title:

Prediction, Validation and Targeted Interference of Erythroid Regulatory Modules

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

regulatory potential
gene regulation
conserved noncoding sequences
transcription factor binding sites

File:

Download HW-Thesis.pdf

Committee Members:

Ross Cameron Hardison, Committee Chair/Co-Chair
Webb Colby Miller, Committee Member
Pamela J Mitchell, Committee Member
Robert Paulson, Committee Member
Anton Nekrutenko, Committee Member

Author:

Zou, Jizhong

Title:

Cis-elements for Notch-dependent expression and autoregulation of Drosophila AP-2 in developing leg and antenna

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

comparative genomics
Drosophila
enhancer
Notch signaling
leg development
transcription factor AP-2

File:

Download ZouThesisFinalHQ.pdf

Committee Members:

David Scott Gilmour, Committee Member
Ross Cameron Hardison, Committee Member
Zhi Chun Lai, Committee Member
Pamela J Mitchell, Committee Chair/Co-Chair
Kyung An Han, Committee Member

Author:

Huisinga, Kathryn Louise

Title:

GLOBAL REGULATION OF GENE EXPRESSION IN SACCHAROMYCES CEREVISIAE VIA TATA BINDING PROTEIN REGULATORY FACTORS

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

TATA Binding Protein
transcription
genome-wide profile
microarray

File:

Download Huisinga_thesis_revisions_full_all.pdf

Committee Members:

Benjamin Franklin Pugh, Committee Chair/Co-Chair
Joseph C. Reese, Committee Member
Ross Cameron Hardison, Committee Member
Naomi S Altman, Committee Member

Author:

Lenox, L. E.

Title:

The flexed-tail (f) Mutant Mouse: Advancing the Understanding of Expansive Erythropoiesis

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

stress erythropoiesis
extra-medullary erythropoiesis
liver
stress BFU-E
spleen
splicing mutation
Smad5
Madh5
BMP4
flexed-tail
expansive erythropoiesis
acute anemia

File:

Download LENOX-thesis.pdf

Committee Members:

Robert Paulson, Committee Chair/Co-Chair
Avery August, Committee Member
Pamela Hankey Giblin, Committee Member
Ross Cameron Hardison, Committee Member
Andrew Thomas Henderson, Committee Member