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Author:

Sha, Congzhou

Title:

Manifold Learning in Structural Biology: Docking, Folding, and Simulation

Graduate Program:

Engineering Science and Mechanics (PHD)

Keywords:

differentiable programming
machine learning
neural networks
structural biology
Lie group
statistical mechanics
molecular dynamics
RNA structure
differential geometry

File:

Download Sha_dissertation-Final.pdf

Committee Members:

Albert Segall, Program Head/Chair
Elizabeth Proctor, Major Field Member
Mehrdad Mahdavi, Outside Field Member
Nikolay Dokholyan, Chair & Dissertation Advisor
Raymond Hohl, Outside Unit Member

Author:

Eckert, Scott

Title:

Studying risk factors for antibiotic resistance from population-scale microbiome data and machine learning

Graduate Program:

Bioinformatics and Genomics (PhD)

Keywords:

Microbiome
bioinformatics
antibiotic resistance
idiopathic pulmonary fibrosis
statistical genetics
machine learning

File:

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Committee Members:

Dajiang Liu, Chair & Dissertation Advisor
James Broach, Major Field Member & Dissertation Advisor
Leslie Parent, Outside Unit & Field Member
Emily Davenport, Major Field Member
David Koslicki, Program Head/Chair

Author:

Arguijo, Juan

Title:

Vision system for the detection of apples in the green fruit stage

Graduate Program:

Agricultural and Biological Engineering (MS)

Keywords:

apple
green fruit
vision system
machine learning
detections

File:

Download Arguijo_Juan_MS-Thesis.pdf

Committee Members:

Paul Heinz Heinemann, Thesis Advisor/Co-Advisor
Long He, Committee Member
Suat Irmak, Program Head/Chair
Shirin Ghatrehsamani, Committee Member
Vishal Monga, Committee Member

Author:

Behoora, Ishan

Title:

Line of sight sensors: Applications and related 1.5D terrain guarding problem variants

Graduate Program:

Computer Science and Engineering (PHD)

Keywords:

machine learning
algorithms
computational geometry
approximation
hardness
line of sight sensors

File:

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Committee Members:

Chitaranjan Das, Program Head/Chair
Martin Fürer, Chair & Dissertation Advisor
Antonio Blanca, Major Field Member
Kamesh Madduri, Major Field Member
Reuben Kraft, Outside Unit & Field Member
Piotr Berman, Special Member

Author:

Liu, Zhihan

Title:

Novel machine learning methods for interpreting human genetic variants

Graduate Program:

Molecular, Cellular, and Integrative Biosciences (PHD)

Keywords:

machine learning
copy number variation
de novo mutation
pathogenicity prediction
penetrance estimation

File:

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Committee Members:

Melissa Rolls, Program Head/Chair
Qunhua Li, Outside Unit & Minor Member
Mingfu Shao, Outside Field Member
Dajiang Liu, Outside Unit Member
Shaun Mahony, Major Field Member
Santhosh Girirajan, Chair & Dissertation Advisor

Author:

Rasool, Asif

Title:

Three Essays in Applied Economics: Topics in Agricultural Economics and Public Finance

Graduate Program:

Energy, Environmental, and Food Economics (PhD)

Keywords:

Climate change
machine learning
cluster analysis
US livestock industry
panel data analysis
fixed effect models

File:

Download AFG.pdfDownload Rasool_Dissertation_May_2024.pdf

Committee Members:

Douglas Wrenn, Program Head/Chair
Chad Dechow, Outside Field Member
Daniel Brent, Major Field Member
Seth Blumsack, Outside Unit Member
Yizao Liu, Major Field Member
Dave Abler, Chair & Dissertation Advisor
Douglas Wrenn, Major Field Member

Author:

Edmunds, Brandon

Title:

Fisher Information for Private Training of Machine Learning Models

Graduate Program:

Computer Science and Engineering (MS)

Keywords:

machine learning
privacy
fisher information

File:

Download Fisher_Information_for_Private_Training_of_Machine_Learning_Models.pdf

Committee Members:

Mehrdad Mahdavi, Thesis Advisor/Co-Advisor
Kiwan Maeng, Committee Member
Chitaranjan Das, Program Head/Chair

Author:

Dasu, Vishnu

Title:

Mitigating Unfairness In Deep Learning

Graduate Program:

Computer Science and Engineering (MS)

Keywords:

machine learning
fairness
software engineering
deep learning

File:

Download MS_Thesis_PSU__Final_.pdf

Committee Members:

G. Gary Tan, Thesis Advisor/Co-Advisor
Shagufta Mehnaz, Committee Member
Chitaranjan Das, Program Head/Chair