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Author:

Zomorrodi, Ali Reza

Title:

Computational tools for genome-scale synthetic lethality analysis and metabolic modeling of microbial communities

Graduate Program:

Chemical Engineering

Keywords:

Metabolic networks
Flux balance analysis
Metabolic Enginnering
Optimization
Systems biology

File:

Download AliRZomorrodi_PhD_Dissertation_Final_2012.pdf

Committee Members:

Costas D Maranas, Dissertation Advisor/Co-Advisor
Costas D Maranas, Committee Chair/Co-Chair
Ali Borhan, Committee Member
Howard M Salis, Committee Member
Reka Z Albert, Committee Member

Author:

Barrows, Clayton Paul

Title:

Flexible Network Topologies and The Smart Grid in Electric Power Systems

Graduate Program:

Energy and Mineral Engineering

Keywords:

Power System Analysis
Optimization
Electricity Markets
Complex Network Science

File:

Download Thesis_Final.pdf

Committee Members:

Seth Adam Blumsack, Dissertation Advisor/Co-Advisor
Reka Z Albert, Committee Member
Andrew Nathan Kleit, Committee Member
Luis Ayala, Committee Member
Paul Hines, Committee Member

Author:

Sawant, Neela Kamlakar

Title:

Statistical Modeling of Image Semantics from Imperfectly Labeled Data Sets

Graduate Program:

Information Sciences and Technology

Keywords:

statistical modeling
image annotation
ARTEMIS
instance-weighting
mixture models
transfer learning
domain adaptation

File:

Download NeelaSawant-Dissertation.pdf

Committee Members:

James Z Wang, Dissertation Advisor/Co-Advisor
Jia Li, Dissertation Advisor/Co-Advisor
John Millar Carroll, Committee Member
C Lee Giles, Committee Member
Reka Z Albert, Committee Member

Author:

Kumar, Sushant

Title:

Molecular principles of folding upon binding processes in disordered proteins: a computational case study

Graduate Program:

Integrative Biosciences

Keywords:

IDPs
Coupled folding-binding
FCP1-Rap74
Structure-based model
Coarse-grained simulations

File:

Download SushantKumar-IBIOS-BG-Dissertation.pdf

Committee Members:

William George Noid, Dissertation Advisor/Co-Advisor
William George Noid, Committee Chair/Co-Chair
Arthur Mallay Lesk, Committee Member
Michael Axtell, Committee Member
Reka Z Albert, Committee Member

Author:

Saha, Rajib

Title:

Reconstruction and analysis of genome-scale metabolic models of photosynthetic organisms

Graduate Program:

Chemical Engineering

Keywords:

Genome-scale model
Cyanobacteria
Zea mays
Cyanothece sp. ATCC51142
Synechocystis sp. PCC6803

File:

Download Saha_dissertation_0728_final.pdf

Committee Members:

Costas D Maranas, Dissertation Advisor/Co-Advisor
Costas D Maranas, Committee Chair/Co-Chair
Andrew Zydney, Committee Member
Howard M Salis, Committee Member
Reka Z Albert, Committee Member

Author:

Evans, Garrett Nolan

Title:

Two Projects in Theoretical Neuroscience: A Convolution-based Metric for Neural Membrane Potentials and a Combinatorial Connectionist Semantic Network Method

Graduate Program:

Physics

Keywords:

distance measure
membrane potential
spike timing
subthreshold
connectionism
combinatorial syntax
semantic network

File:

Download GNEvansDissertationFinalWithCV.pdf

Committee Members:

John C Collins, Dissertation Advisor/Co-Advisor
John C Collins, Committee Chair/Co-Chair
Reka Z Albert, Committee Member
Steven Schiff, Committee Member
Bradley Paul Wyble, Committee Member
Peter Cm Molenaar, Special Member

Author:

Schafer, Phillip Baker

Title:

Neuroscience-inspired computational systems for speech recognition under noisy conditions

Graduate Program:

Physics

Keywords:

speech recognition
spike code
noise
neural representation

File:

Download PBSchafer_Dissertation.pdf

Committee Members:

Dezhe Jin, Dissertation Advisor/Co-Advisor
John Collins, Committee Member
Reka Z Albert, Committee Member
Patrick James Drew, Committee Member

Author:

Steinway, Steven Nathaniel

Title:

Predictive Network Modeling And Experimentation In Complex Biological Systems: Applications To Cancer And Infectious Disease

Graduate Program:

Molecular Medicine

Keywords:

Network analysis
dynamic modeling
discrete dynamic modeling
cancer
microbiome
tumor invasion & metastasis

File:

Download Steinway-Thesis-Full-5-20-15.pdf

Committee Members:

Reka Z Albert, Dissertation Advisor/Co-Advisor
"Thomas P Loughran, Jr", Dissertation Advisor/Co-Advisor
Reka Z Albert, Committee Chair/Co-Chair
David J Feith, Committee Member
James Riley Broach, Committee Member
Diane M Thiboutot, Committee Member

Author:

Sun, Zhongyao

Title:

Analysis and Logical Modeling of Biological Signaling Transduction Networks

Graduate Program:

Physics

Keywords:

network science
biological networks
discrete dynamics
Boolean network
system biology
network modeling
signal transduction

File:

Download Dissertation_Zhongyao_Sun.pdf

Committee Members:

Reka Z Albert, Dissertation Advisor/Co-Advisor
Reka Z Albert, Committee Chair/Co-Chair
Dezhe Jin, Committee Member
Jorge Osvaldo Sofo, Committee Member
John Fricks, Committee Member

Author:

Skocik, Michael Joseph

Title:

Bio-inspired and Neuromorphic Machine Vision System for Analyzing Three-dimensional Data

Graduate Program:

Physics

Keywords:

Computer Aided Diagnosis
Computer Assisted Radiology
Alzheimer's
Mild Cognitive Impairment
Machine Learning
Machine Vision

File:

Download Michael_Skocik-Dissertation.pdf

Committee Members:

Bradley Paul Wyble, Dissertation Advisor/Co-Advisor
John Collins, Committee Chair/Co-Chair
Reka Z Albert, Committee Member
Carina Pamela Curto, Committee Member