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Author:

Burgard, Anthony P.

Title:

OPTIMIZATION-BASED FRAMEWORKS FOR THE ANALYSIS AND REDESIGN OF METABOLIC NETWORKS

Graduate Program:

Chemical Engineering

Keywords:

metabolic network
stoichiometric modeling
microbial strain design

File:

Download Thesis_Complete.pdf

Committee Members:

Costas D Maranas, Committee Chair/Co-Chair
Andrew Zydney, Committee Member
Darrell Velegol, Committee Member
Reka Z Albert, Committee Member

Author:

On, Byung-Won

Title:

Data Cleaning Techniques by means of Entity Resolution

Graduate Program:

Computer Science and Engineering

Keywords:

Data Mining
Clustering Algorithms
Graph Algorithms

File:

Download dissertation.pdf

Committee Members:

Dongwon Lee, Committee Chair/Co-Chair
C Lee Giles, Committee Member
Sandeep Purao, Committee Member
Wang Chien Lee, Committee Member
Piotr Berman, Committee Member
Reka Z Albert, Committee Member

Author:

Carrino, Christopher N.

Title:

A Study of Repeat Collaboration in Social Affiliation Networks

Graduate Program:

Industrial Engineering

Keywords:

social network analysis
repeat collaboration
link prediction
link analysis
affiliation network
centrality
similarity
network data mining
pareto clique

File:

Download ChristopherCarrino-Dissertation.pdf

Committee Members:

Soundar Rajan Tirupatikumara, Committee Chair/Co-Chair
Reka Z Albert, Committee Member
Leah C Newman, Committee Member
Tao Yao, Committee Member

Author:

Christensen, Claire Petra

Title:

INFERENCE, SIMULATION, MODELING, AND ANALYSIS OF COMPLEX NETWORKS, WITH SPECIAL EMPHASIS ON COMPLEX NETWORKS IN SYSTEMS BIOLOGY

Graduate Program:

Physics

Keywords:

systems biology
gene regulatory networks
graph theory
networks
disease dynamics
computational modeling

File:

Download Christensen_thesis.pdf

Committee Members:

Reka Z Albert, Committee Chair/Co-Chair
Dezhe Jin, Committee Member
Peter E Schiffer, Committee Member
Costas D Maranas, Committee Member

Author:

Wolfe, Daniel N.

Title:

Interactions Between Endemic Bordetella Species and Host Immunity

Graduate Program:

Pathobiology

Keywords:

infectious disease
bacteria
parapertussis
Bordetella
whooping cough

File:

Download thesis__final_version_.pdf

Committee Members:

Eric Thomas Harvill, Committee Chair/Co-Chair
Avery August, Committee Member
Reka Z Albert, Committee Member
Biao He, Committee Member
Mary J Kennett, Committee Member

Author:

Mallapragada, Girish

Title:

Being Open in a Closed World: Essays on Innovation in Open Source Networks

Graduate Program:

Business Administration

Keywords:

new product development
innovation
collaboration
social networks
open source

File:

Download Girish_Mallapragada_Dissertation.pdf

Committee Members:

Gary L Lilien, Committee Chair/Co-Chair
Rajdeep Grewal, Committee Chair/Co-Chair
William T Ross, Committee Member
John C Liechty, Committee Member
Reka Z Albert, Committee Member

Author:

Thadakamalla, Hari Prasad

Title:

Decentralized algorithms for search and routing in large-scale networks

Graduate Program:

Industrial Engineering

Keywords:

decentralized search
localized algorithms
complex networks
networks
local search
algorithms

File:

Download Thadakamalla-Dissertation.pdf

Committee Members:

Soundar Rajan Tirupatikumara, Committee Chair/Co-Chair
Reka Z Albert, Committee Chair/Co-Chair
M Jeya Chandra, Committee Member
Arunachalam Ravindran, Committee Member
Arvind Rangaswamy, Committee Member
Leonid N Vaserstein, Committee Member

Author:

De Keyser, Joshua Gordon

Title:

ALTERNATIVE SPLICING OF THE HUMAN CONSTITUTIVE ANDROSTANE RECEPTOR GENE CREATES RECEPTORS WITH UNIQUE FUNCTION AND LIGAND SPECIFICITY

Graduate Program:

Molecular Toxicology

Keywords:

phthalates
alternative splicing
constitutive androstane receptor
drug and xenobiotic metabolism
meclizine
nuclear receptors
gene induction

File:

Download DeKeyser_dissertation_final.pdf

Committee Members:

Curtis John Omiecinski, Dissertation Advisor/Co-Advisor
Curtis John Omiecinski, Committee Chair/Co-Chair
Reka Z Albert, Committee Member
Adam Bleier Glick, Committee Member
John Patrick Vanden Heuvel, Committee Member

Author:

JEONG, JIEUN

Title:

Algorithms for classification and prediction of protein structure and function

Graduate Program:

Computer Science and Engineering

Keywords:

protein structure
protein folds
hairpin loops
folding rules
approximation algorithms
gene regulatory network

File:

Download mythesis.pdf

Committee Members:

Piotr Berman, Committee Chair/Co-Chair
Arthur Mallay Lesk, Committee Member
Webb Colby Miller, Committee Member
Reka Z Albert, Committee Member

Author:

Ko, Kyung Dae

Title:

QUANTITATIVE FUNCTIONAL MEASUREMENT OF A PROTEIN USING PHYLOGENETIC PROFILES

Graduate Program:

Integrative Biosciences

Keywords:

the function of protein
proteomics
bioinformatics
RNA binding protein

File:

Download dissertation_kkd_final.pdf

Committee Members:

Randen L Patterson, Dissertation Advisor/Co-Advisor
Randen L Patterson, Committee Chair/Co-Chair
Reka Z Albert, Committee Member
Anton Nekrutenko, Committee Member
Michael N Teng, Committee Member
Damian Van Rossum, Committee Member