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Start Over Graduate Program Chemistry Year 2009 Committee Member Philip C. Bevilacqua

1. Protein-RNA interactions involved in regulation of the tryptophan biosynthesis operon (trpEDCFBA) in Bacillus subtilis

open_access
Open Access
Author:
McGraw, Adam Philip
Title:
Protein-RNA interactions involved in regulation of the tryptophan biosynthesis operon (trpEDCFBA) in Bacillus subtilis
Graduate Program:
Chemistry
Keywords:
protein-RNA interactions
mRNA stability
TRAP
RNA structure
File:
Download AM_thesis_FINAL-2-101008.pdf
Committee Members:
Paul Lee Babitzke, Committee Chair/Co-Chair
Philip C. Bevilacqua, Committee Chair/Co-Chair
Kenneth Charles Keiler, Committee Member
Christine Dolan Keating, Committee Member

2. ELUCIDATING THERMODYNAMIC RELATIONSHIPS IN THE RNA STRUCTURAL HIERARCHY: MOLECULAR ORIGINS OF STABILITY

open_access
Open Access
Author:
Blose, Joshua Matthew
Title:
ELUCIDATING THERMODYNAMIC RELATIONSHIPS IN THE RNA STRUCTURAL HIERARCHY: MOLECULAR ORIGINS OF STABILITY
Graduate Program:
Chemistry
Keywords:
Cooperative Folding
Thermophilic Adaptation
Tetraloop
RNA
Nonlinear Poisson-Boltzmann
NLPB
Electrostatics
File:
Download JMB_Dissertation_082009.pdf
Committee Members:
Philip C. Bevilacqua, Dissertation Advisor/Co-Advisor
Philip C. Bevilacqua, Committee Chair/Co-Chair
Sharon Hammes Schiffer, Committee Member
Tae Hee Lee, Committee Member
Kenneth Charles Keiler, Committee Member

3. Demonstrating the versatility of the iDNA scaffold: New synthetic strategies and applications

open_access
Open Access
Author:
Levine, Lauren Aimee
Title:
Demonstrating the versatility of the iDNA scaffold: New synthetic strategies and applications
Graduate Program:
Chemistry
Keywords:
artifical peptides
metal-binding
File:
Download LaurenFinalThesis.pdf
Committee Members:
Mary Elizabeth Williams, Dissertation Advisor/Co-Advisor
Mary Elizabeth Williams, Committee Chair/Co-Chair
Philip C. Bevilacqua, Committee Member
Scott A Showalter, Committee Member
John H Golbeck, Committee Member

4. ENCAPSULATION EFFICIENCY AND DYNAMIC MICROCOMPARTMENTATION WITHIN GIANT LIPID VESICLES

open_access
Open Access
Author:
Dominak, Lisa M
Title:
ENCAPSULATION EFFICIENCY AND DYNAMIC MICROCOMPARTMENTATION WITHIN GIANT LIPID VESICLES
Graduate Program:
Chemistry
Keywords:
protein microcompartmentation
synthetic cells
macromolecular crowding
encapsulation efficiency
lipid vesicles
biomimetic chemistry
File:
Download LDominak_PhD_2009_final.pdf
Committee Members:
Christine Dolan Keating, Dissertation Advisor/Co-Advisor
Christine Dolan Keating, Committee Chair/Co-Chair
Philip C. Bevilacqua, Committee Member
Anne M Andrews, Committee Member
Peter J Butler, Committee Member

5. Anharmonic Effects of Small Clusters of Molecules and Ranking Activity of Protein Mutants

open_access
Open Access
Author:
Kumarasiri, Malika Dhananjaya
Title:
Anharmonic Effects of Small Clusters of Molecules and Ranking Activity of Protein Mutants
Graduate Program:
Chemistry
Keywords:
Molecular Dynamics
Mutant Studies
File:
Download Thesis_mdk.pdf
Committee Members:
Prof Sharon Hammes Schiffer, Dissertation Advisor/Co-Advisor
Sharon Hammes Schiffer, Committee Chair/Co-Chair
Will Castleman, Committee Member
Philip C. Bevilacqua, Committee Member
James David Kubicki, Committee Member

6. Microfluidic systems for high-throughput single-cell assays

open_access
Open Access
Author:
Santillo, Michael
Title:
Microfluidic systems for high-throughput single-cell assays
Graduate Program:
Chemistry
Keywords:
Microfluidics
lab-on-a-chip
confocal
fluorescence
cell assay
bioanalytical chemistry
computational fluid dynamics
CFD
PDMS
File:
Download mf_santillo_dissertation.pdf
Committee Members:
Andrew Ewing, Dissertation Advisor/Co-Advisor
Andrew Ewing, Committee Chair/Co-Chair
Philip C. Bevilacqua, Committee Member
Thomas E Mallouk, Committee Member
Andrew Zydney, Committee Member

7. Folding Cooperativity and Its Influence on pKa Shifting in Nucleic Acids

open_access
Open Access
Author:
Siegfried, Nathan A.
Title:
Folding Cooperativity and Its Influence on pKa Shifting in Nucleic Acids
Graduate Program:
Chemistry
Keywords:
pKa shift
RNA
DNA
nucleic acids
cooperativity
acid base catalysis
File:
Download Siegfried_Thesis.pdf
Committee Members:
Philip C. Bevilacqua, Dissertation Advisor/Co-Advisor
Philip C. Bevilacqua, Committee Chair/Co-Chair
Squire J Booker, Committee Member
Scott A Showalter, Committee Member
Katsuhiko Murakami, Committee Member