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Start Over Graduate Program Biochemistry, Microbiology, and Molecular Biology Year 2008

2. HIGH-RESOLUTION GENOME-WIDE ORGANIZATION OF THE YEAST TRANSCRIPTION MACHINERY

open_access
Open Access
Author:
Venters, Bryan Jacob
Title:
HIGH-RESOLUTION GENOME-WIDE ORGANIZATION OF THE YEAST TRANSCRIPTION MACHINERY
Graduate Program:
Biochemistry, Microbiology, and Molecular Biology
Keywords:
ChIP-chip
Tiling microarrays
Pre-initiation complex
Chromatin
Saccharomyces
Mot1
File:
Download 080724_Venters_Thesis.pdf
Committee Members:
Benjamin Franklin Pugh, Committee Chair/Co-Chair
Joseph C. Reese, Committee Member
Ross Cameron Hardison, Committee Member
David Scott Gilmour, Committee Member
Naomi S Altman, Committee Member

3. The role of the Kar2p/BiP chaperone in ER quality control

open_access
Open Access
Author:
Hsu, Chia-Ling
Title:
The role of the Kar2p/BiP chaperone in ER quality control
Graduate Program:
Biochemistry, Microbiology, and Molecular Biology
Keywords:
ER sress tolerance
unfolded protein response
ER quality control
Kar2p/BiP
File:
Download Microsoft_Word_-_Chapter1-another_copy_for_graduate_school.pdf
Committee Members:
Wesley Tsoekjen Ng, Committee Chair/Co-Chair
Sarah Ellen Ades, Committee Member
David Scott Gilmour, Committee Member
Douglas Cavener, Committee Member

4. GENOME-WIDE ANALYSIS OF NELF: NELF IS LINKED TO PROMOTER PROXIMAL PAUSING THROUGHOUT THE DROSOPHILA GENOME

open_access
Open Access
Author:
Lee, Chanhyo
Title:
GENOME-WIDE ANALYSIS OF NELF: NELF IS LINKED TO PROMOTER PROXIMAL PAUSING THROUGHOUT THE DROSOPHILA GENOME
Graduate Program:
Biochemistry, Microbiology, and Molecular Biology
Keywords:
elongation
transcription
promoter proximal pausing
NELF
GAGA factor
RNA polymerase II
File:
Download ChanhyoLee_dissertation.pdf
Committee Members:
David Scott Gilmour, Committee Chair/Co-Chair
Benjamin Franklin Pugh, Committee Member
Joseph C. Reese, Committee Member
B Tracy Nixon, Committee Member
Pamela Hankey Giblin, Committee Member
Andrew Thomas Henderson, Committee Member
Richard John Frisque, Committee Member

5. EVOLUTION AND ACTIVITY OF AN ERYTHROID CIS-REGULATORY MODULE IN MULTIPLE MAMMALIAN LINEAGES

open_access
Open Access
Author:
Abebe, Demesew F
Title:
EVOLUTION AND ACTIVITY OF AN ERYTHROID CIS-REGULATORY MODULE IN MULTIPLE MAMMALIAN LINEAGES
Graduate Program:
Biochemistry, Microbiology, and Molecular Biology
Keywords:
boreoeutheria
Motif constraint
CIS-REGULATORY MODULE
GATA1
File:
Download DA-Thesis-Final.pdf
Committee Members:
Ross Cameron Hardison, Thesis Advisor/Co-Advisor
Ross Cameron Hardison, Thesis Advisor/Co-Advisor

6. Mechanistic Investigation of the Escherichia coli Lipoyl Synthase

open_access
Open Access
Author:
Billgren, Elizabeth Star
Title:
Mechanistic Investigation of the Escherichia coli Lipoyl Synthase
Graduate Program:
Biochemistry, Microbiology, and Molecular Biology
Keywords:
glycine cleavage system
H protein
lipoamidase
lipoate protein ligase A
lipoyl synthase
lipoic acid
radical SAM superfamily
File:
Download ESB_MS_FINAL.pdf
Committee Members:
Squire J Booker, Thesis Advisor/Co-Advisor
Squire J Booker, Thesis Advisor/Co-Advisor

7. CENTROSOME ATTACHMENT TO THE NUCLEUS REQUIRES THE SUN-1 MEDIATED LOCALIZATION OF ZYG-12 TO THE OUTER MEMBRANE OF THE NUCLEAR ENVELOPE IN C. ELEGANS EMBRYOS

open_access
Open Access
Author:
Minn, Il
Title:
CENTROSOME ATTACHMENT TO THE NUCLEUS REQUIRES THE SUN-1 MEDIATED LOCALIZATION OF ZYG-12 TO THE OUTER MEMBRANE OF THE NUCLEAR ENVELOPE IN C. ELEGANS EMBRYOS
Graduate Program:
Biochemistry, Microbiology, and Molecular Biology
Keywords:
Centrosome
SUN-1
ZYG-12
Attachment
File:
Download Thesis_ILMINN.pdf
Committee Members:
Wendy Hanna Rose, Committee Chair/Co-Chair
Christian Lorenzo Malone, Committee Member
Avery August, Committee Member
Melissa Rolls, Committee Member
Richard Cyr, Committee Member

8. Carotenoid biosynthesis in Synechococcus sp. PCC 7002: Identification of the enzymes and the carotenoids

open_access
Open Access
Author:
Graham, Joel Edward
Title:
Carotenoid biosynthesis in Synechococcus sp. PCC 7002: Identification of the enzymes and the carotenoids
Graduate Program:
Biochemistry, Microbiology, and Molecular Biology
Keywords:
aromatic carotenoids
carotenoids
carotenes
myxoxanthophyll
lycopene cyclase
synechoxanthin
carotenoid biosynthesis
File:
Download jegdissertation.pdf
Committee Members:
Donald Ashley Bryant, Committee Chair/Co-Chair
John H Golbeck, Committee Member
James Gregory Ferry, Committee Member
Kathleen Postle, Committee Member
Juliette Lecomte, Committee Member

9. REGULATION OF THE ARYL HYDROCARBON RECEPTOR PROTEIN LEVELS AND SIGNAL TRANSDUCTION PATHWAYS

open_access
Open Access
Author:
Morales, Jose Luis
Title:
REGULATION OF THE ARYL HYDROCARBON RECEPTOR PROTEIN LEVELS AND SIGNAL TRANSDUCTION PATHWAYS
Graduate Program:
Biochemistry, Microbiology, and Molecular Biology
Keywords:
AhR
hsp90
CHIP
Ubiquitin
Immunity
NF-kB
File:
Download THESISFINAL_MASTER-FINAL4-11-2008.pdf
Committee Members:
Craig Richard Baumrucker, Committee Member
Gary H Perdew, Committee Chair/Co-Chair
Avery August, Committee Member
Richard John Frisque, Committee Member
Jeffrey Maurice Peters, Committee Member

10. MOLECULAR CLONING OF A C. elegans LONGEVITY GENE pnc-1 AND INVESTIGATION OF ITS NOVEL FUNCTION IN DEVELOPMENT

open_access
Open Access
Author:
Huang, Li
Title:
MOLECULAR CLONING OF A C. elegans LONGEVITY GENE pnc-1 AND INVESTIGATION OF ITS NOVEL FUNCTION IN DEVELOPMENT
Graduate Program:
Biochemistry, Microbiology, and Molecular Biology
Keywords:
nicotiamidase
gonad development
egg-laying defect
EGF signaling
uv1 cells
NAD
File:
Download LiHuang_Thesis_2008.pdf
Committee Members:
Wendy Hanna Rose, Committee Chair/Co-Chair
Diana Lynn Cox Foster, Committee Member
Emine Koc, Committee Member
Zhi Chun Lai, Committee Member
Pamela J Mitchell, Committee Member

11. X-RAY CRYSTAL STRUCTURES EXPLAIN DNA-HAIRPIN PROMOTER BINDING AND DE NOVO TRANSCRIPTION INITIATION FOR THE N4 VIRION RNA POLYMERASE

open_access
Open Access
Author:
Gleghorn, Michael L
Title:
X-RAY CRYSTAL STRUCTURES EXPLAIN DNA-HAIRPIN PROMOTER BINDING AND DE NOVO TRANSCRIPTION INITIATION FOR THE N4 VIRION RNA POLYMERASE
Graduate Program:
Biochemistry, Microbiology, and Molecular Biology
Keywords:
X-ray crystallography
RNA polymerase
transcription
de novo transcription initiation
two-metal catalysis
File:
Download Gleghorn_2008_Final_Dissertation.pdf
Committee Members:
Katsuhiko Murakami, Committee Chair/Co-Chair
Biao He, Committee Member
Craig Eugene Cameron, Committee Member
B Tracy Nixon, Committee Member
Song Tan, Committee Member

12. REGULATION OF T HELPER CELL RESPONSES AND ALLERGIC ASTHMA BY TEC KINASES, ITK AND TXK

open_access
Open Access
Author:
Sahu, Nisebita
Title:
REGULATION OF T HELPER CELL RESPONSES AND ALLERGIC ASTHMA BY TEC KINASES, ITK AND TXK
Graduate Program:
Biochemistry, Microbiology, and Molecular Biology
Keywords:
Allergic Asthma
Tec kinases
Itk
T helper 2 cells
cytokines
chemokines
File:
Download Sahu_N._Ph.D_Dissertation.pdf
Committee Members:
Avery August, Committee Chair/Co-Chair
Robert Paulson, Committee Member
Andrea Marie Mastro, Committee Member
Wendy Hanna Rose, Committee Member
Pamela Hankey, Committee Member
Dr Biao He, Committee Member
Dr Nadine B Smith, Committee Member

13. The Enzymatic Properties of Peptidylarginine Deiminase 4 and its Negative Regulatory Effect Upon NSAID Activated Gene-1

open_access
Open Access
Author:
Doret, Patrick Thomas
Title:
The Enzymatic Properties of Peptidylarginine Deiminase 4 and its Negative Regulatory Effect Upon NSAID Activated Gene-1
Graduate Program:
Biochemistry, Microbiology, and Molecular Biology
Keywords:
NSAID Activated Gene-1
Peptidylarginine Deiminase 4
Citrullination
File:
Download BookVersion.FinalThesis_-_Doret-Final.pdf
Committee Members:
Yanming Wang, Thesis Advisor/Co-Advisor

14. ANALYSIS OF RNA POLYMERASE II ON THE DROSOPHILA GENOME AND THE IMPACT OF THE TERMINATION FACTOR PCF11

open_access
Open Access
Author:
Fan, Ruopeng
Title:
ANALYSIS OF RNA POLYMERASE II ON THE DROSOPHILA GENOME AND THE IMPACT OF THE TERMINATION FACTOR PCF11
Graduate Program:
Biochemistry, Microbiology, and Molecular Biology
Keywords:
Transcription Termination
Drosophila
Pcf11
Pol II
ChIP-chip
File:
Download RuopengFan2009.pdf
Committee Members:
David Scott Gilmour, Dissertation Advisor/Co-Advisor
David Scott Gilmour, Committee Chair/Co-Chair
Benjamin Franklin Pugh, Committee Member
Song Tan, Committee Member
Paul Lee Babitzke, Committee Member
Philip C. Bevilacqua, Committee Member

16. Formation and function of a novel heterobinuclear Mn/Fe redox cofactor in ribonucleotide reductase from Chlamydia trachomatis

open_access
Open Access
Author:
Jiang, Wei
Title:
Formation and function of a novel heterobinuclear Mn/Fe redox cofactor in ribonucleotide reductase from Chlamydia trachomatis
Graduate Program:
Biochemistry, Microbiology, and Molecular Biology
Keywords:
ribonucleotide reductase
Chlamydia trachomatis
manganese/iron cluster
proton-coupled electron transfer
electron paramagnetic resonance
Mossbauer spectroscopy
File:
Download thesis_Jiang.pdf
Committee Members:
J Martin Bollinger, Jr And Carsten Krebs, Dissertation Advisor/Co-Advisor
Joseph M Bollinger Jr., Committee Chair/Co-Chair
Carsten Krebs, Committee Chair/Co-Chair
Squire J Booker, Committee Member
Ming Tien, Committee Member
Michael Thomas Green, Committee Member
Scott A Showalter, Committee Member

18. DEPLETION OF NUCLEAR ENVELOPE COMPONENTS CAUSES A NOVEL CENTROSOME ATTACHMENT DEFECT

open_access
Open Access
Author:
Gao, Zhizhen
Title:
DEPLETION OF NUCLEAR ENVELOPE COMPONENTS CAUSES A NOVEL CENTROSOME ATTACHMENT DEFECT
Graduate Program:
Biochemistry, Microbiology, and Molecular Biology
Keywords:
Lamin-binding proteins
Nuclear lamins
Nuclear size
Centrosome attachment
Nuclear Pores
File:
Download thesis_Zhizhen_Gao.pdf
Committee Members:
Wendy Hanna Rose, Thesis Advisor/Co-Advisor
Christian Lorenzo Malone, Thesis Advisor/Co-Advisor