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1. Dissecting the Mechanism Underlying Epigenetic Activation of the Maize <I>Spm</I> Transposon by the Element-Encoded TnpA Protein

open_access
Open Access
Author:
Cui, Hongchang
Title:
Dissecting the Mechanism Underlying Epigenetic Activation of the Maize <I>Spm</I> Transposon by the Element-Encoded TnpA Protein
Graduate Program:
Plant Physiology
Keywords:
transposon
<I>Spm</I>
Epigenetic
demethylation
methylation
demethylase
TnpA
transposase
inducible promoter
transcription
chromatin
File:
Download thesis.pdf
Committee Members:
Nina Fedoroff, Committee Chair/Co-Chair
Jerry L Workman, Committee Member
Hong Ma, Committee Member
Teh Hui Kao, Committee Member

2. Role of Cysteine Protease Cathepsin L in Maintenance of Epigenetic Histone Modifications and Constitutive Heterochromatin

open_access
Open Access
Author:
Bulynko, Yaroslava
Title:
Role of Cysteine Protease Cathepsin L in Maintenance of Epigenetic Histone Modifications and Constitutive Heterochromatin
Graduate Program:
Biochemistry and Molecular Biology
Keywords:
histone modifications
protease
chromatin
File:
Download Thesis_Bulynko.pdf
Committee Members:
Sergei A Grigoryev, Committee Chair/Co-Chair
Laura Carrel, Committee Member
Momcilo Miljkovic, Committee Member
Vincent Chau, Committee Member
Judith S Bond, Committee Member

3. The Ccr4-Not complex regulates transcription elongation and chromatin modifications

open_access
Open Access
Author:
Kruk, Jennifer Ann
Title:
The Ccr4-Not complex regulates transcription elongation and chromatin modifications
Graduate Program:
Biochemistry, Microbiology, and Molecular Biology
Keywords:
Ccr4-Not
chromatin
transcription
histone methylation
elongation
RNAPII
File:
Download JK_Dissertation_v8.pdf
Committee Members:
Joseph C. Reese, Dissertation Advisor/Co-Advisor
Joseph C. Reese, Committee Chair/Co-Chair
Craig Eugene Cameron, Committee Member
David Scott Gilmour, Committee Member
Benjamin Franklin Pugh, Committee Member
Liwang Cui, Committee Member
Yanming Wang, Committee Member

4. Analysis of the Histone N-termini in Transcriptional Regulation

open_access
Open Access
Author:
Psathas, James Nicholas
Title:
Analysis of the Histone N-termini in Transcriptional Regulation
Graduate Program:
Biochemistry, Microbiology, and Molecular Biology
Keywords:
chromatin
histone modifications
transcription
H3
H4
Set2
transcription elongation
splicing
transcription termination
methylation
File:
Download JNP_Dissertation_v10.pdf
Committee Members:
Joseph C. Reese, Dissertation Advisor/Co-Advisor
Joseph C. Reese, Committee Chair/Co-Chair
David Scott Gilmour, Committee Member
Benjamin Franklin Pugh, Committee Member
Song Tan, Committee Member
Hong Ma, Committee Member

5. GENOME-WIDE ROLE OF HISTONE ACETYLTRANSFERASES AND CHROMATIN REGULATORS IN REGULATING YEAST CHROMATIN AND GENE TRANSCRIPTION

open_access
Open Access
Author:
Durant, Melissa
Title:
GENOME-WIDE ROLE OF HISTONE ACETYLTRANSFERASES AND CHROMATIN REGULATORS IN REGULATING YEAST CHROMATIN AND GENE TRANSCRIPTION
Graduate Program:
Biochemistry, Microbiology, and Molecular Biology
Keywords:
chromatin
gene regulation
transcription factor
histone acetylation
microarray
File:
Download Durant_Thesis.pdf
Committee Members:
Benjamin Franklin Pugh, Committee Chair/Co-Chair
Ross Cameron Hardison, Committee Member
Emine Koc, Committee Member
Song Tan, Committee Member
Naomi S Altman, Committee Member

6. Regulation of Donor Preference during Yeast Mating-Type Switching

open_access
Open Access
Author:
Ercan, Sevinc
Title:
Regulation of Donor Preference during Yeast Mating-Type Switching
Graduate Program:
Biochemistry, Microbiology, and Molecular Biology
Keywords:
mating type switching
yeast
chromatin
recombination enhancer
donor preference
File:
Download Thesis.pdf
Committee Members:
Joseph C. Reese, Committee Chair/Co-Chair
Avery August, Committee Member
David Scott Gilmour, Committee Member
Song Tan, Committee Member
Hong Ma, Committee Member
Jerry L Workman, Committee Member

8. Mechanisms of Nucleosome Positioning and Transcription Regulation of Yeast DNA Damage Inducible Genes

open_access
Open Access
Author:
Zhang, Zhengjian
Title:
Mechanisms of Nucleosome Positioning and Transcription Regulation of Yeast DNA Damage Inducible Genes
Graduate Program:
Biochemistry, Microbiology, and Molecular Biology
Keywords:
DNA damage
imitation switch (ISWI)
transcription repression
Ssn6-Tup1
nucleosome positioning
chromatin
File:
Download ZZthesis.pdf
Committee Members:
Joseph C. Reese, Committee Chair/Co-Chair
Jerry L Workman, Committee Member
David Scott Gilmour, Committee Member
Wesley Tsoekjen Ng, Committee Member
Liwang Cui, Committee Member

9. Functional recognition of the nucleosome by the chromatin factors Piccolo NuA4 and RCC1/Ran

open_access
Open Access
Author:
Huang, Jiehuan
Title:
Functional recognition of the nucleosome by the chromatin factors Piccolo NuA4 and RCC1/Ran
Graduate Program:
Biochemistry and Molecular Biology
Keywords:
nucleosome
histone acetyltransferase
UV crosslinking
chromatin
File:
Download JH_Huang_Dissertation_Final.pdf
Committee Members:
Song Tan, Dissertation Advisor/Co-Advisor
David Scott Gilmour, Committee Member
B Tracy Nixon, Committee Member
Joseph C. Reese, Committee Member
Philip C. Bevilacqua, Committee Member

10. Role of chromatin in promoter proximal pausing in Drosophila

open_access
Open Access
Author:
Achary, Bhavana Gopalakrishnan
Title:
Role of chromatin in promoter proximal pausing in Drosophila
Graduate Program:
Biochemistry, Microbiology, and Molecular Biology
Keywords:
chromatin
pausing
nucleosome positioning
histone deacetylases
File:
Download S_thesis_formatted_Bhavana_Achary.pdf
Committee Members:
David Scott Gilmour, Dissertation Advisor/Co-Advisor
David Scott Gilmour, Committee Chair/Co-Chair
Song Tan, Committee Member
Joseph C. Reese, Committee Member
Yanming Wang, Committee Member
Pamela Hankey Giblin, Special Member

11. STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF LSD1/COREST HISTONE DEMETHYLASE COMPLEX ON THE NUCLEOSOME

open_access
Open Access
Author:
Kim, Sang-Ah
Title:
STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF LSD1/COREST HISTONE DEMETHYLASE COMPLEX ON THE NUCLEOSOME
Graduate Program:
Biochemistry, Microbiology, and Molecular Biology
Keywords:
nucleosome
chromatin
structural biology
gene regulation
histone demethylase
lsd1
File:
Download PhD_Dissertation__Sang-Ah_Kim__-_Final_Draft_2016_12_08.pdf
Committee Members:
Song Tan, Dissertation Advisor/Co-Advisor
Andrey S. Krasilnikov, Committee Chair/Co-Chair
Lu Bai, Committee Member
David S. Gilmour, Committee Member
Scott Showalter, Outside Member

13. Accessing the inaccessible: Y Chromosome and heterochromatin in genomes of great apes

open_access
Open Access
Author:
Cechova, Monika
Title:
Accessing the inaccessible: Y Chromosome and heterochromatin in genomes of great apes
Graduate Program:
Biology
Keywords:
Y chromosome
heterochromatin
great apes
satellite
Nanopore
PacBio
sex chromosomes
chromatin
mutation
File:
Download Cechova_dissertation_Spring2020.pdf
Committee Members:
Kateryna Dmytrivna Makova, Dissertation Advisor/Co-Advisor
Stephen Wade Schaeffer, Committee Chair/Co-Chair
Francesca Chiaromonte, Committee Member
Paul Medvedev, Outside Member
Raquel Assis, Committee Member
Stephen Wade Schaeffer, Program Head/Chair