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Author:

Wu, Dai-Chen

Title:

FROM EXPLORING ROLES OF SIGNALS IN STRESS ERYTHROPOIESIS TO IN VITRO EXPANDING STRESS ERYTHROID PROGENITORS THAT ALLEVIATE ANEMIA

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

Hedgehog
BMP4
hypoxia
hematopoiesis
erythropoiesis
GDF15
anemia
stem cell

File:

Download DC_Wu_Dissertation_Final_renumbered.pdf

Committee Members:

Robert Paulson, Dissertation Advisor/Co-Advisor
Robert Paulson, Committee Member
Douglas Cavener, Committee Member
David Scott Gilmour, Committee Member
Pamela Hankey Giblin, Committee Member
Ross Cameron Hardison, Committee Member

Author:

Wang, Hao

Title:

Prediction, Validation and Targeted Interference of Erythroid Regulatory Modules

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

regulatory potential
gene regulation
conserved noncoding sequences
transcription factor binding sites

File:

Download HW-Thesis.pdf

Committee Members:

Ross Cameron Hardison, Committee Chair/Co-Chair
Webb Colby Miller, Committee Member
Pamela J Mitchell, Committee Member
Robert Paulson, Committee Member
Anton Nekrutenko, Committee Member

Author:

Perry, John Mark

Title:

The Discovery and Characterization of the BMP4-mediated Stress Erythroid Response to Acute Anemia

Graduate Program:

Integrative Biosciences

Keywords:

stress erythropoiesis
erythropoisis
acute anemia
BMP4

File:

Download PhD_Thesis-JohnMPerry.pdf

Committee Members:

Robert Paulson, Committee Chair/Co-Chair
Pamela Hankey Giblin, Committee Member
Ross Cameron Hardison, Committee Member
Andrew Thomas Henderson, Committee Member
Pamela J Mitchell, Committee Member

Author:

Lenox, L. E.

Title:

The flexed-tail (f) Mutant Mouse: Advancing the Understanding of Expansive Erythropoiesis

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

stress erythropoiesis
extra-medullary erythropoiesis
liver
stress BFU-E
spleen
splicing mutation
Smad5
Madh5
BMP4
flexed-tail
expansive erythropoiesis
acute anemia

File:

Download LENOX-thesis.pdf

Committee Members:

Robert Paulson, Committee Chair/Co-Chair
Avery August, Committee Member
Pamela Hankey Giblin, Committee Member
Ross Cameron Hardison, Committee Member
Andrew Thomas Henderson, Committee Member

Author:

Reviriego Mendoza, Marta Maria

Title:

JC VIRUS LARGE T ANTIGEN INTERACTS WITH THE F-BOX PROTEIN b-TRANSDUCIN REPEAT CONTAINING PROTEIN (bTrCP), THEREBY INFLUENCING VIRAL DNA REPLICATION

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

viral DNA replication
JC virus
proteasome
bTrCP

File:

Download reviriegoMendozaPhDThesis.pdf

Committee Members:

Richard John Frisque, Dissertation Advisor/Co-Advisor
Richard John Frisque, Committee Chair/Co-Chair
Ross Cameron Hardison, Committee Member
Jean Elnora Brenchley, Committee Member
Gary H Perdew, Committee Member
Robert Paulson, Committee Member
Anthony Paul Schmitt, Committee Member

Author:

Harandi, Omid Fasihi

Title:

ANALYSIS OF ERYTHROID RECOVERY FROM BONE MARROW TRANSPLANTATION

Graduate Program:

Genetics

Keywords:

Bone Marrow Transplantation
Red Blood Cell
Anemia

File:

Download PhD_Thesis-Omid_Harandi-Final.pdf

Committee Members:

Robert Paulson, Committee Member
Pamela Hankey Giblin, Committee Chair/Co-Chair
Ross Cameron Hardison, Committee Member
Avery August, Committee Member
Kenneth Monrad Weiss, Committee Member
Andrew Thomas Henderson, Committee Member

Author:

Zhang, Ying

Title:

Distinctive Genomic Features of Erythroid Cis-Regulatory Modules

Graduate Program:

Genetics

Keywords:

Cis-Regulatory Modules
GATA1
ESPERR
Word Enumeration
ChIP

File:

Download Thesis.pdf

Committee Members:

Ross Cameron Hardison, Dissertation Advisor/Co-Advisor
Robert Paulson, Committee Chair/Co-Chair
Ross Cameron Hardison, Committee Member
Douglas Cavener, Committee Member
Francesca Chiaromonte, Committee Member
Kateryna Dmytrivna Makova, Committee Member

Author:

Cheng, Yong

Title:

MAPPING, CONSERVATION AND FUNCTION OF BINDING SITES FOR ERTHYROID TRANSCRIPTION FACTOR GATA1 IN THE MOUSE GENOME

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

conservation
ChIP-chip
GATA1
function

File:

Download Thesis_yongcheng.pdf

Committee Members:

Ross Cameron Hardison, Dissertation Advisor/Co-Advisor
Ross Cameron Hardison, Committee Chair/Co-Chair
Robert Paulson, Committee Member
Stephan C Schuster, Committee Member
David Scott Gilmour, Committee Member
Reka Z Albert, Committee Member

Author:

Kumar, Swathi Ashok

Title:

Epigenetic Modulation of Erythroid Expression: An Integrative Stud of Histone Modifications, Transcription Factors and Transcriptomes.

Graduate Program:

Genetics

Keywords:

Epigenetics
erythroid differentiation
multivariate statistics
histone modifications
transcription factors
G1E
G1E-ER4+E2

File:

Download KumarSA_May2012.pdf

Committee Members:

Ross Cameron Hardison, Dissertation Advisor/Co-Advisor
Robert Paulson, Committee Chair/Co-Chair
David Scott Gilmour, Committee Member
Kateryna Dmytrivna Makova, Committee Member
Francesca Chiaromonte, Special Member

Author:

Jain, Deepti Prakash

Title:

Genome wide dynamics of GATA1 binding provide insights into the mechanisms of erythroid differentiation

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

GATA1
Next generation sequencing
Quality control
reproducibility
eryhtropoiesis

File:

Download DeeptiJain_dissertation.pdf

Committee Members:

Ross Cameron Hardison, Dissertation Advisor/Co-Advisor
Ross Cameron Hardison, Committee Chair/Co-Chair
Qunhua Li, Committee Member
Robert Paulson, Committee Member
David Scott Gilmour, Committee Member
Benjamin Franklin Pugh, Committee Member

Author:

Mishra, Tejaswini

Title:

Integrative genome-wide studies to elucidate regulation of lineage choice in hematopoiesis

Graduate Program:

Cell and Developmental Biology

Keywords:

hematopoiesis
genomics
gene regulation;RNA-seq;erythroblast;megakaryocyte

File:

Download Dissertation_TejaswiniMishra.pdf

Committee Members:

Ross Cameron Hardison, Dissertation Advisor/Co-Advisor
Michael Axtell, Committee Member
Benjamin Franklin Pugh, Committee Member
Robert Paulson, Committee Member
Debashis Ghosh, Committee Member

Author:

Dogan, Nergiz

Title:

Elucidating Biological Function of Genomic DNA with Robust Signals of Biochemical Activity: Integrative Genome-wide Studies of Enhancers

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

Functional genomics
Gene regulation
TAL1
GATA1
Histone modifications
Enhancer assay

File:

Download Dogan_PhDThesis_final.pdf

Committee Members:

Ross Cameron Hardison, Dissertation Advisor/Co-Advisor
Ross Cameron Hardison, Committee Chair/Co-Chair
David Scott Gilmour, Committee Member
Robert Paulson, Committee Member
Philip L Reno, Committee Member
Anton Nekrutenko, Committee Member

Author:

Xiang, Jie

Title:

REGULATION OF STRESS ERYTHROPOIESIS: INTERACTION BETWEEN MICROENVIRONMENT AND STRESS ERYTHROID PROGENITORS

Graduate Program:

Integrative Biosciences

Keywords:

Stress erythropoiesis
Stem cell
Epo
progenitors
Anemia

File:

Download Jie_Xiang-Phd_Thesis-_final_updated.pdf

Committee Members:

Robert Paulson, Dissertation Advisor/Co-Advisor
Robert Paulson, Committee Chair/Co-Chair
Ross Cameron Hardison, Committee Member
Zhi Chun Lai, Committee Member
Kumble Sandeep Prabhu, Committee Member
Yanming Wang, Committee Member
Naomi S Altman, Committee Member

Author:

Bendor, Liron

Title:

Novel Mechanisms of Bordetella Survival in the Mammalian Host and in the Environment

Graduate Program:

Genetics

Keywords:

Bordetella
bordetella bronchiseptica
amoeba
dictyostelium
amoeba
Type Six Secretion System
intracellular survival

File:

Download THESIS_LIRON_BENDOR.pdf

Committee Members:

Eric Thomas Harvill, Dissertation Advisor/Co-Advisor
Robert Paulson, Committee Chair/Co-Chair
Kenneth Charles Keiler, Committee Member
Mary J Kennett, Committee Member
Ross Cameron Hardison, Committee Member

Author:

Bennett, Laura F

Title:

Analysis of Stress Erythropoiesis: Stimulation of Toll-Like Receptors Induces Erythrophagocytosis and Activates Stress Erythropoiesis

Graduate Program:

Genetics

Keywords:

Stress erythropoiesis
inflammation
erythrophagocytosis
heme
anemia
pro-inflammatory cytokines

File:

Download LF_Bennett_Dissertation_Aug_2017_FINAL.pdf

Committee Members:

Robert Paulson, Dissertation Advisor/Co-Advisor
Pamela Hankey Giblin, Committee Chair/Co-Chair
Ross Cameron Hardison, Committee Member
Zhi-Chun Lai, Committee Member
Kumble Sandeep Prabhu, Outside Member
Connie Jo Rogers, Committee Member

Author:

Chen, Di

Title:

Genome Architecture and Evolution Shaped by Transposable Elements

Graduate Program:

Genetics

Keywords:

Transposable Elements
L1
Functional Data Analysis
Genome Evolution
Genetics

File:

Download Di_Chen_Genetics_Dissertation_Final_Dec18_2020.pdf

Committee Members:

Mark Shriver, Dissertation Advisor/Co-Advisor
Ross Cameron Hardison, Committee Chair/Co-Chair
Stephen Wade Schaeffer, Committee Member
Robert Paulson, Outside Member
Robert Paulson, Program Head/Chair