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Start Over Committee Member Naomi S Altman Committee Member Stephen Wade Schaeffer

1. DENSITY ESTIMATION AND MODAL BASED METHOD FOR HAPLOTYPING AND RECOMBINATION

open_access
Open Access
Author:
Mao, Xianyun
Title:
DENSITY ESTIMATION AND MODAL BASED METHOD FOR HAPLOTYPING AND RECOMBINATION
Graduate Program:
Statistics
Keywords:
Expectation Maximization
Density Estimator
Genetics
File:
Download phd.pdf
Committee Members:
Bruce G Lindsay, Dissertation Advisor/Co-Advisor
Bruce G Lindsay, Committee Chair/Co-Chair
Naomi S Altman, Committee Member
Yu Zhang, Committee Member
Stephen Wade Schaeffer, Committee Member

2. DNA sequence analysis: new applications with high throughput sequencing and new methods in studying gene families and human haplogroups

open_access
Open Access
Author:
Sun, Yazhou
Title:
DNA sequence analysis: new applications with high throughput sequencing and new methods in studying gene families and human haplogroups
Graduate Program:
Genetics
Keywords:
DNA sequence analysis
DNA sequence analysis methods
DNA sequence analysis applications
File:
Download SunThesis3.pdf
Committee Members:
Hong Ma, Dissertation Advisor/Co-Advisor
Stephen Wade Schaeffer, Committee Chair/Co-Chair
Gong Chen, Committee Member
Naomi S Altman, Special Member
Anton Nekrutenko, Committee Member

3. understanding gene expression and genetic recombination by next generation sequencing

open_access
Open Access
Author:
Han, Xinwei
Title:
understanding gene expression and genetic recombination by next generation sequencing
Graduate Program:
Genetics
Keywords:
next generation sequencing
meiotic recombination
small RNA
cortex gene expression
File:
Download Xinwei_Han_thesis.pdf
Committee Members:
Hong Ma, Dissertation Advisor/Co-Advisor
Stephen Wade Schaeffer, Committee Chair/Co-Chair
Gong Chen, Committee Member
Naomi S Altman, Special Member
Anton Nekrutenko, Committee Member

4. Molecular Evolutionary Analysis of Plastid Genomes in Nonphotosynthetic Angiosperms and Cancer Cell Lines

open_access
Open Access
Author:
Zhang, Yan
Title:
Molecular Evolutionary Analysis of Plastid Genomes in Nonphotosynthetic Angiosperms and Cancer Cell Lines
Graduate Program:
Biology
Keywords:
Plastid genome
parasitic plant
molecular evolution
cancer cell lines
File:
Download 1-Zhang.Dissertation.pdf
Committee Members:
Claude W De Pamphilis, Dissertation Advisor/Co-Advisor
Stephen Wade Schaeffer, Committee Chair/Co-Chair
Hong Ma, Committee Member
Naomi S Altman, Committee Member

5. Horizontal Gene Transfer Studies in Parasitic Plants of the Orobanchaceae

open_access
Open Access
Author:
Zhang, Yeting
Title:
Horizontal Gene Transfer Studies in Parasitic Plants of the Orobanchaceae
Graduate Program:
Genetics
Keywords:
Horizontal gene transfer
Parasitic plants
Orobanchaceae
File:
Download yetingDissertationOri.pdf
Committee Members:
Claude W De Pamphilis, Dissertation Advisor/Co-Advisor
Stephen Wade Schaeffer, Committee Chair/Co-Chair
Tomas Carlo, Committee Member
Naomi S Altman, Committee Member
John Edward Carlson, Committee Member

6. Computational methods for comparative genomics of non-model species: a case study in the parasitic plant family Orobanchaceae

open_access
Open Access
Author:
Wafula, Eric
Title:
Computational methods for comparative genomics of non-model species: a case study in the parasitic plant family Orobanchaceae
Graduate Program:
Biology
Keywords:
Computational biology
Evolutionary biology
Bioinformatics
Comparative genomics
Next-generation sequencing
de novo assembly
Genome annotation
Gene expression
Whole genome duplication
Gene duplication
Phylogenomics
Ancestral reconstruction
Transcriptomics
Orthogroups
Gene family evolution
Parasitic plants
Orobanchaceae
Striga
File:
Download Eric_wafula_dissertation_final_submission.pdf
Committee Members:
Claude Walker Depamphilis, Dissertation Advisor/Co-Advisor
James Harold Marden, Committee Chair/Co-Chair
Istvan Albert, Outside Member
Naomi S Altman, Outside Member
Stephen Wade Schaeffer, Program Head/Chair