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Start Over Graduate Program Computer Science and Engineering Committee Member Kamesh Madduri

1. Robust, Adaptable Many-Objective Optimization: The Foundations, Parallelization and Application of the Borg MOEA

open_access
Open Access
Author:
Hadka, David M
Title:
Robust, Adaptable Many-Objective Optimization: The Foundations, Parallelization and Application of the Borg MOEA
Graduate Program:
Computer Science and Engineering
Keywords:
borg
moea
multiobjective
optimization
many-objective
evolutionary
algorithm
File:
Download Hadka_Dissertation_Final.pdf
Committee Members:
Patrick M Reed, Dissertation Advisor/Co-Advisor
Kamesh Madduri, Committee Chair/Co-Chair
Sofya Raskhodnikova, Committee Member
Soundar Kumara, Committee Member
Timothy William Simpson, Committee Member
Mark Thomas Traband, Committee Member

2. Computational Approaches for Integrative Detection of Protein-DNA Interactions

open_access
Open Access
Author:
Chen, Kuanbei
Title:
Computational Approaches for Integrative Detection of Protein-DNA Interactions
Graduate Program:
Computer Science and Engineering
Keywords:
Computational Biology
Bioinformatics
Peak-Calling
ChIP-seq
Gene regulation
Comparative Genomics
File:
Download Kuan-Bei.dissertation.pdf
Committee Members:
Webb Colby Miller, Dissertation Advisor/Co-Advisor
Webb Colby Miller, Committee Chair/Co-Chair
Dr Yu Zhang, Dissertation Advisor/Co-Advisor
Ross Cameron Hardison, Committee Member
Padma Raghavan, Committee Member
Kamesh Madduri, Committee Member

3. Quadratic Binary Optimization for Pedestrian Detection in Crowded Scenes

open_access
Open Access
Author:
Rujkietgumjorn, Sitapa
Title:
Quadratic Binary Optimization for Pedestrian Detection in Crowded Scenes
Graduate Program:
Computer Science and Engineering
Keywords:
Pedestrian Detection
Optimized Detection
Quadratic Binary Optimization
Occlusion
Crowds
File:
Download Rujikietgumjorn-Dissertation-final-version.pdf
Committee Members:
Robert T Collins, Dissertation Advisor/Co-Advisor
Robert T Collins, Committee Chair/Co-Chair
Jesse Louis Barlow, Committee Member
Kamesh Madduri, Committee Member
Paul GriFfin, Committee Member

5. Improving Performance and Energy of Parallel Sparse Computations through Hybrid Linear Solvers and Model-driven Optimization

open_access
Open Access
Author:
Booth, Joshua Dennis
Title:
Improving Performance and Energy of Parallel Sparse Computations through Hybrid Linear Solvers and Model-driven Optimization
Graduate Program:
Computer Science and Engineering
Keywords:
Numerical
Sparse
Linear Solvers
High Performance Computing
Model-Driven
Energy Aware
Hybrid Solvers
Irregular Problems
File:
Download Booth-ThesisMain-V3.pdf
Committee Members:
Padma Raghavan, Dissertation Advisor/Co-Advisor
Mahmut Taylan Kandemir, Committee Member
Kamesh Madduri, Committee Member
Christopher J Duffy, Special Member

6. EXPLOITING GRAPH EMBEDDING FOR PARALLELISM AND PERFORMANCE

open_access
Open Access
Author:
Kirmani, Shad
Title:
EXPLOITING GRAPH EMBEDDING FOR PARALLELISM AND PERFORMANCE
Graduate Program:
Computer Science and Engineering
Keywords:
Parallel computing
graph partitioning
topology
graphs
File:
Download ShadKirmani-Dissertation-2.pdf
Committee Members:
Padma Raghavan, Dissertation Advisor/Co-Advisor
Padma Raghavan, Committee Chair/Co-Chair
Kamesh Madduri, Committee Member
Mahmut Taylan Kandemir, Committee Member
Christopher J Duffy, Committee Member

7. Improving Prediction, Recommendation, and Classification using User-generated Content and Relationships

open_access
Open Access
Author:
Chang, Hau-wen
Title:
Improving Prediction, Recommendation, and Classification using User-generated Content and Relationships
Graduate Program:
Computer Science and Engineering
Keywords:
data mining
location estimation
recommender system
keyword recommendation
text minging
File:
Download hauwen150729.pdf
Committee Members:
Dongwon Lee, Dissertation Advisor/Co-Advisor
Wang Chien Lee, Committee Chair/Co-Chair
Kamesh Madduri, Committee Member
Dinghao Wu, Committee Member

9. Reuse distance models for accelerating scientific computing workloads on multicore processors

open_access
Open Access
Author:
Park, Jeonghyung
Title:
Reuse distance models for accelerating scientific computing workloads on multicore processors
Graduate Program:
Computer Science and Engineering
Keywords:
high performance computing
scientific computing
parallel computing
performance optimization
File:
Download Jeong-Dissertation.pdf
Committee Members:
Padma Raghavan, Dissertation Advisor/Co-Advisor
Padma Raghavan, Committee Chair/Co-Chair
Mahmut Taylan Kandemir, Committee Member
Kamesh Madduri, Committee Member
Christopher J Duffy, Committee Member

11. Irregular Graph Algorithms on Modern Multicore, Manycore, and Distributed Processing Systems

open_access
Open Access
Author:
Slota, George Michael
Title:
Irregular Graph Algorithms on Modern Multicore, Manycore, and Distributed Processing Systems
Graduate Program:
Computer Science and Engineering
Keywords:
graph mining
high performance computing
graph partitioning
subgraph isomorphism
File:
Download slota-thesis.pdf
Committee Members:
Kamesh Madduri, Dissertation Advisor/Co-Advisor
Kamesh Madduri, Committee Chair/Co-Chair
Mahmut Taylan Kandemir, Committee Member
Wang Chien Lee, Committee Member
Soundar Kumara, Committee Member
Sivasankaran Rajamanickam, Special Member

13. Scalable graph and mesh algorithms on distributed-memory systems

open_access
Open Access
Author:
Panitanarak, Thap
Title:
Scalable graph and mesh algorithms on distributed-memory systems
Graduate Program:
Computer Science and Engineering
Keywords:
parallel computation
graph algorithm
distributed memory algorithm
graph data structure
linear solver
mesh warping
SSSP
mesh partitioning
File:
Download Thap-Dissertation.pdf
Committee Members:
Kamesh Madduri, Dissertation Advisor/Co-Advisor
Kamesh Madduri, Committee Chair/Co-Chair
Suzanne M. Shontz, Committee Member
Mahmut T. Kandemir, Committee Member
Keefe B. Manning, Outside Member

15. HARDWARE SOFTWARE CO-DESIGN FOR OPTIMIZING MEMORY HIERARCHY IN MANY-CORE AND MULTI-SOCKET SYSTEMS

open_access
Open Access
Author:
Kotra, Jagadish Babu
Title:
HARDWARE SOFTWARE CO-DESIGN FOR OPTIMIZING MEMORY HIERARCHY IN MANY-CORE AND MULTI-SOCKET SYSTEMS
Graduate Program:
Computer Science and Engineering
Keywords:
Hardware-software co-design
memory hierarchy
manycore processors
memory
caches
File:
Download Jagadish-Dissertation.pdf
Committee Members:
Mahmut Taylan Kandemir, Dissertation Advisor/Co-Advisor
Mahmut Taylan Kandemir, Committee Chair/Co-Chair
Mary Jane Irwin, Committee Member
Kamesh Madduri, Committee Member
Dinghao Wu, Outside Member

16. Hardware-Aware Computation Reorganization for Memory Intensive Applications

open_access
Open Access
Author:
Kislal, Orhan Memduh
Title:
Hardware-Aware Computation Reorganization for Memory Intensive Applications
Graduate Program:
Computer Science and Engineering
Keywords:
memory
performance
compiler
approximate computing
File:
Download omk_diss_submit.pdf
Committee Members:
Mahmut Taylan Kandemir, Dissertation Advisor/Co-Advisor
Mahmut Taylan Kandemir, Committee Chair/Co-Chair
Kamesh Madduri, Committee Member
John Morgan Sampson, Committee Member
Conrad S Tucker, Outside Member

17. HIERARCHICAL SPARSE GRAPH COMPUTATIONS ON MULTICORE PLATFORMS

open_access
Open Access
Author:
Kabir, Humayun
Title:
HIERARCHICAL SPARSE GRAPH COMPUTATIONS ON MULTICORE PLATFORMS
Graduate Program:
Computer Science and Engineering
Keywords:
k-core
k-truss
multicore
sparse matrix
network analysis
graph analysis
File:
Download Humayun-Dissertation-final.pdf
Committee Members:
Kamesh Madduri, Dissertation Advisor/Co-Advisor
Kamesh Madduri, Committee Chair/Co-Chair
Mahmut T. Kandemir, Committee Member
Wang-Chien Lee, Committee Member
Vasant Honavar, Outside Member

18. Scalable and Accurate Algorithms for Search in Genomic Big Data and Analysis of Genetic Variants

open_access
Open Access
Author:
Sun, Chen
Title:
Scalable and Accurate Algorithms for Search in Genomic Big Data and Analysis of Genetic Variants
Graduate Program:
Computer Science and Engineering
Keywords:
Algorithm
Big Data
Database
Genomics
Probabilistic Data Structures
Data Mining
Parallel Computing
Bioinformatics
Genetic Variants
SNP
Computational Biology
File:
Download ChenSun_dissertation_v0830.pdf
Committee Members:
Paul Medvedev, Dissertation Advisor/Co-Advisor
Paul Medvedev, Committee Chair/Co-Chair
Daniel Kifer, Committee Member
Kamesh Madduri, Committee Member
Michael Degiorgio, Outside Member

19. Engineering high performance workflows for end-to-end acceleration of genomic applications

open_access
Open Access
Author:
Rengasamy, Vasudevan
Title:
Engineering high performance workflows for end-to-end acceleration of genomic applications
Graduate Program:
Computer Science and Engineering
Keywords:
Variant detection
Metagenome assembly
Word2Vec
High performance computing
File:
Download vasudevan-dissertation.pdf
Committee Members:
Kamesh Madduri, Dissertation Advisor/Co-Advisor
Kamesh Madduri, Committee Chair/Co-Chair
Mahmut Taylan Kandemir, Committee Member
Paul Medvedev, Committee Member
Santhosh Girirajan, Outside Member
Wang-Chien Lee, Committee Member

20. Machine-Learning-Based Approaches for Learning Marketing Strategies

open_access
Open Access
Author:
Lin, Yu San
Title:
Machine-Learning-Based Approaches for Learning Marketing Strategies
Graduate Program:
Computer Science and Engineering
Keywords:
machine learning
deep learning
probabilistic generative model
marketing
crowdfunding
menu design
competition
word worth
reward
kickstarter
File:
Download yusan-Dissertation_v3.pdf
Committee Members:
Wang-Chien Lee, Dissertation Advisor/Co-Advisor
Kamesh Madduri, Committee Member
Sencun Zhu, Committee Member
Wang-Chien Lee, Committee Member
Mary Beth Rosson, Outside Member
Wang-Chien Lee, Committee Chair/Co-Chair

21. Temporal and Structural Machine Learning from Transportation Data

open_access
Open Access
Author:
Zhan, Hongyuan
Title:
Temporal and Structural Machine Learning from Transportation Data
Graduate Program:
Computer Science and Engineering
Keywords:
machine learning
time series prediction
optimization
intelligent transportation
structural learning
File:
Download HyZhanDissertation.pdf
Committee Members:
Kamesh Madduri, Dissertation Advisor/Co-Advisor
Kamesh Madduri, Committee Chair/Co-Chair
Jesse Louis Barlow, Committee Member
Wang-Chien Lee, Committee Member
Necdet S Aybat, Outside Member
Kesheng Wu, Special Member
Xiaoye Sherry Li, Special Member
Gabriel Gomes, Special Member

23. Enhancing Ad-blocking Systems for Better Web Browsing Security and Privacy

open_access
Open Access
Author:
Alrizah, Mshabab
Title:
Enhancing Ad-blocking Systems for Better Web Browsing Security and Privacy
Graduate Program:
Computer Science and Engineering
Keywords:
Ad-blocking systems
privacy
security
Internet Security
crowdsourcing
Advertisement
File:
Download Mshabab_Dissertation.pdf
Committee Members:
Sencun Zhu, Dissertation Advisor/Co-Advisor
Sencun Zhu, Committee Chair/Co-Chair
Mehrdad Mahdavi, Committee Member
Kamesh Madduri, Committee Member
Jia Li, Outside Member
Xinyu Xing, Dissertation Advisor/Co-Advisor
Xinyu Xing, Committee Chair/Co-Chair
Chitaranjan Das, Program Head/Chair

24. Applications of the compacted de bruijn graph in Comparative genomics

open_access
Open Access
Author:
Minkin, Ilia
Title:
Applications of the compacted de bruijn graph in Comparative genomics
Graduate Program:
Computer Science and Engineering
Keywords:
De Bruijn graph
Comparative genomics
Sequence alignment
Sequence analysis
File:
Download Minkin-Dissertation.pdf
Committee Members:
Paul Medvedev, Dissertation Advisor/Co-Advisor
Paul Medvedev, Committee Chair/Co-Chair
Kamesh Madduri, Committee Member
Mingfu Shao, Committee Member
Kateryna Dmytrivna Makova, Outside Member
Chitaranjan Das, Program Head/Chair

26. GRAPH AND TRAJECTORY MINING: FRAMEWORKS,ALGORITHMS AND APPLICATIONS

open_access
Open Access
Author:
Fu, Tao Yang
Title:
GRAPH AND TRAJECTORY MINING: FRAMEWORKS,ALGORITHMS AND APPLICATIONS
Graduate Program:
Computer Science and Engineering
Keywords:
machine learning
representation learning
neural network
network data
trajectory data
spatio-temporal data
node classification
link prediction
travel time estmiation
route planning
File:
Download dissertation_final.pdf
Committee Members:
Wang-Chien Lee, Dissertation Advisor/Co-Advisor
Wang-Chien Lee, Committee Chair/Co-Chair
Sencun Zhu, Committee Member
Kamesh Madduri, Committee Member
Jia Li, Outside Member
Zhen Lei, Dissertation Advisor/Co-Advisor
Paul Medvedev, Committee Member
Chitaranjan Das, Program Head/Chair
Zhen Lei, Committee Chair/Co-Chair

27. Adversarial Attacks and Representation Learning for Graph-structured Data

open_access
Open Access
Author:
Sun, Yiwei
Title:
Adversarial Attacks and Representation Learning for Graph-structured Data
Graduate Program:
Computer Science and Engineering
Keywords:
Adversarial Attacks
Graph Mining
Graph Representation Learning
File:
Download YiweiSunThesis_update.pdf
Committee Members:
Vasant Gajanan Honavar, Dissertation Advisor/Co-Advisor
Suhang Wang, Dissertation Advisor/Co-Advisor
Sencun Zhu, Committee Member
Kamesh Madduri, Committee Member
Soundar Rajan Tirupatikumara, Outside Member
Chitaranjan Das, Program Head/Chair
Vasant Gajanan Honavar, Committee Chair/Co-Chair