Cysteine Biosynthesis and Sulfur Fixation in the Archaea

Open Access
Author:
Borup, Birthe
Graduate Program:
Chemistry
Degree:
Doctor of Philosophy
Document Type:
Dissertation
Date of Defense:
February 16, 2001
Committee Members:
  • James Gregory Ferry, Committee Chair
  • Philip C. Bevilacqua, Committee Member
  • Juliette T J Lecomte, Committee Chair
  • Joseph M Bollinger Jr., Committee Member
Keywords:
  • NifS
  • cysteine desulfuration
  • IscS
Abstract:
Cysteine plays a critical role in the structure, stability and catalytic function of many proteins in all domains of life. Cysteine is also the major source of sulfur for the synthesis of sulfur-containing compounds in organisms of the Bacteria and Eukarya domains. Two routes for cysteine biosynthesis in nature have been documented, pathways I and II. Plants and members of the Bacteria domain synthesize cysteine and fix sulfur via pathway I. Fungi fix sulfide and synthesize cysteine using pathway I or II. Although the genomes of seven members of the archaea have been sequenced to date, the data offer little understanding of cysteine biosynthesis in this domain. Presented here is the purification and characterization of the first archaeal enzyme catalyzing sulfur fixation and cysteine biosynthesis, O-acetylserine sulfhydrylase, from the methanoarchaeon Methanosarcina thermophila. Evidence was obtained for the involvement of O-acetylserine sulfhydrylase in cysteine biosynthesis by pathway I through biochemical, physiological and genetic means. O-acetylserine sulfhydrylase from M. thermophila exhibits positive co-operativity indicative of involvement in a biosynthetic pathway. O-acetylserine sulfhydrylase expression is elevated under growth conditions where the organism must synthesize cysteine, compared to expression levels where cysteine is provided in the media. The two genes involved in pathway I are transcribed in the same direction and possibly form an operon in M. thermophila. Activities of enzymes of pathway II are not detected in cell free extract, indicating that the only other pathway known for the synthesis of cysteine is not operable in M. thermophila under the conditions tested. Evidence is presented implicating an additional function for O-acetylserine sulfhydrylase. Over 90% of cysteine desulfurase activity in cell extracts of cells grown with cysteine as the sole sulfur source is due to O-acetylserine sulfhydrylase, suggesting the possibility that O-acetylserine sulfhydrylase provides the primary source of sulfide for biosynthesis. Patterns of expression levels in the presence and absence of sulfide, growth patterns with trimethylamine, inhibition by ammonia of the desulfurase activity, and changes in sulfide concentration of the media during growth support this interpretation. Experimental advances were made to obtain genetic knock-out mutants in M. thermophila deficient in the genes of pathway I to determine if an additional, novel pathway exists for cysteine biosynthesis in the archaea, and to test the hypothesis for the role of O-acetylserine sulfhydrylase in the desulfuration of cysteine to supply sulfur for biosynthesis. In addition a novel assay was developed for sulfide detection in cell extracts that is less prone to high background absorbances than published methods.