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Author:

Christensen, Claire Petra

Title:

INFERENCE, SIMULATION, MODELING, AND ANALYSIS OF COMPLEX NETWORKS, WITH SPECIAL EMPHASIS ON COMPLEX NETWORKS IN SYSTEMS BIOLOGY

Graduate Program:

Physics

Keywords:

systems biology
gene regulatory networks
graph theory
networks
disease dynamics
computational modeling

File:

Download Christensen_thesis.pdf

Committee Members:

Reka Z Albert, Committee Chair/Co-Chair
Dezhe Jin, Committee Member
Peter E Schiffer, Committee Member
Costas D Maranas, Committee Member

Author:

Lull, Melinda Elaine

Title:

Systems Biology Analysis of Abstinence from Cocaine Self-Administration

Graduate Program:

Pharmacology

Keywords:

systems biology
self-administration
abstinence
cocaine
proteomics
microarray

File:

Download Lull_-_Revised_Dissertation.pdf

Committee Members:

Kent Eugene Vrana, Dissertation Advisor/Co-Advisor
Kent Eugene Vrana, Committee Chair/Co-Chair
John Ellis, Committee Member
Willard M Freeman, Ph D, Committee Member
Andras Hajnal, Committee Member
Bruce A Stanley, Committee Member

Author:

Li, Song

Title:

Identification of Key Regulators of Guard Cell Functions Using Systems Biology Approaches

Graduate Program:

Integrative Biosciences

Keywords:

systems biology
guard cells

File:

Download SongLi_Dissertation.pdf

Committee Members:

Sarah Mary Assmann, Dissertation Advisor/Co-Advisor
Sarah Mary Assmann, Committee Chair/Co-Chair
Reka Z Albert, Committee Chair/Co-Chair
Andrew George Stephenson, Committee Member
Claude Walker Depamphilis, Committee Member
Debashis Ghosh, Committee Member

Author:

Kumar, Vinay

Title:

SYSTEMS BASED OPTIMIZATION APPROACHES TO ANALYZE AND IMPROVE METABOLIC NETWORKS

Graduate Program:

Industrial Engineering

Keywords:

Optimization
systems biology
metabolism
gaps

File:

Download dissertation_final_final_final.pdf

Committee Members:

Dr Costas D Maranas/ Dr Soundar T Kumara, Dissertation Advisor/Co-Advisor
Costas D Maranas, Committee Chair/Co-Chair
Soundar T Kumara, Committee Chair/Co-Chair
James Gregory Ferry, Committee Member
David Arthur Nembhard, Committee Member
Arunachalam Ravindran, Committee Member

Author:

Campbell, Colin Edward

Title:

complex dynamics of biological systems

Graduate Program:

Physics

Keywords:

complex systems
network theory
systems biology
cancer
ecosystem stability
immune system

File:

Download Dissertation_-_Colin_Campbell.pdf

Committee Members:

Reka Z Albert, Dissertation Advisor/Co-Advisor
Dezhe Jin, Committee Member
Alexay Kozhevnikov, Committee Member
Istvan Albert, Committee Member

Author:

Rozum, Jordan

Title:

Attractor identification and control of Boolean and ODE network models in systems biology

Graduate Program:

Physics

Keywords:

systems biology
network science
discrete dynamics
Boolean networks
gene regulatory networks
ordinary differential equations
control theory
stable motifs

File:

Download Rozum_Dissertation_format-revision.pdf

Committee Members:

Dezhe Jin, Major Field Member
Lu Bai, Major Field Member
Reka Albert, Chair & Dissertation Advisor
Timothy Reluga, Outside Unit & Field Member
Nitin Samarth, Program Head/Chair

Author:

Leighow, Scott

Title:

Forecasting and Forward Engineering Anticancer Drug Resistance

Graduate Program:

Bioengineering

Keywords:

cancer
drug resistance
systems biology
synthetic biology
stochastic modeling
gene therapy

File:

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Committee Members:

David Kennedy, Outside Unit & Field Member
Xiaojun Lian, Major Field Member
Justin Pritchard, Chair & Dissertation Advisor
Daniel Hayes, Program Head/Chair
William Hancock, Major Field Member