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Author:

Dasika, Madhukar S

Title:

SYSTEMS ENGINEERING BASED APPROACHES FOR BIOLOGICAL NETWORK INFERENCE, ANALYSIS AND REDESIGN

Graduate Program:

Chemical Engineering

Keywords:

gene regulatory networks
signaling networks
Optimization
synthetic biology

File:

Download Dasika_Thesis.pdf

Committee Members:

Costas D Maranas, Committee Chair/Co-Chair
Reka Z Albert, Committee Member
Patrick C Cirino, Committee Member
Antonios Armaou, Committee Member

Author:

Chen, Long

Title:

engineering a synthetic replication system to securely store recombinant Dna

Graduate Program:

Agricultural and Biological Engineering

Keywords:

synthetic biology
recombinant DNA
plasmid replication

File:

Download Final_Thesis_Long_2012.pdf

Committee Members:

Howard M Salis, Thesis Advisor/Co-Advisor

Author:

Reis, Alexander

Title:

Sequence-Level Design of Evolutionary-Robust Genetic Systems

Graduate Program:

Chemical Engineering

Keywords:

synthetic biology
biophysics
CRISPR
genetic circuits
translation initiation

File:

Download Alex_Reis_Dissertation.pdf

Committee Members:

Howard M Salis, Dissertation Advisor/Co-Advisor
Howard M Salis, Committee Chair/Co-Chair
Phillip E Savage, Committee Member
Kristen Fichthorn, Committee Member
Philip C Bevilacqua, Outside Member
Phillip E Savage, Program Head/Chair

Author:

Vezeau, Grace

Title:

Developing Nucleic Acid-Based Biosensor Platforms

Graduate Program:

Agricultural and Biological Engineering (PHD)

Keywords:

synthetic biology
biosensors
RNA
riboswitch
CRISPR-Cas9
cell-free expression systems
biophysics
nucleic acid secondary structure

File:

Download Grace_Vezeau_dissertation.pdf

Committee Members:

Jeffrey Catchmark, Major Field Member
Howard Salis, Chair & Dissertation Advisor
Philip Bevilacqua, Outside Unit Member
Paul Heinemann, Program Head/Chair
Andrew Zydney, Outside Field Member

Author:

Roggenbaum, Morgan

Title:

Engineering transcriptional logic within bacteria using complex, modular CRISPRi circuit arrays

Graduate Program:

Agricultural and Biological Engineering (MS)

Keywords:

synthetic biology
genetic circuits
CRISPRi
transcriptional read-through

File:

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Committee Members:

Jeffrey Catchmark, Professor in Charge/Director of Graduate Studies
Howard M Salis, Thesis Advisor/Co-Advisor
Justin R Pritchard, Committee Member
Esther Gomez, Committee Member

Author:

Leighow, Scott

Title:

Forecasting and Forward Engineering Anticancer Drug Resistance

Graduate Program:

Bioengineering (PHD)

Keywords:

cancer
drug resistance
systems biology
synthetic biology
stochastic modeling
gene therapy

File:

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Committee Members:

David Kennedy, Outside Unit & Field Member
Xiaojun Lian, Major Field Member
Justin Pritchard, Chair & Dissertation Advisor
Daniel Hayes, Program Head/Chair
William Hancock, Major Field Member

Author:

Baker, Remmi

Title:

Just Keep Swimming: Designing and Fabricating Autonomous Artificial Microswimmers

Graduate Program:

Materials Science and Engineering

Keywords:

microswimmer
chemistry
physics
synthetic biology
artificial swimmer
artificial life
nanofabrication
3d printing
lithography
colloids
drug delivery
medicine
microfluidics
biology
biomimic
robotics
microrobotics

File:

Download baker_Finalizedthesis.pdf

Committee Members:

Igor S Aronson, Dissertation Advisor/Co-Advisor
Igor S Aronson, Committee Chair/Co-Chair
James Hansell Adair, Outside Member
Venkatraman Gopalan, Outside Member
Ayusman Sen, Committee Member
Lauren Dell Zarzar, Committee Member
John C Mauro, Program Head/Chair