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Author:

Kim, Sang-Ah

Title:

STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF LSD1/COREST HISTONE DEMETHYLASE COMPLEX ON THE NUCLEOSOME

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

nucleosome
chromatin
structural biology
gene regulation
histone demethylase
lsd1

File:

Download PhD_Dissertation__Sang-Ah_Kim__-_Final_Draft_2016_12_08.pdf

Committee Members:

Song Tan, Dissertation Advisor/Co-Advisor
Andrey S. Krasilnikov, Committee Chair/Co-Chair
Lu Bai, Committee Member
David S. Gilmour, Committee Member
Scott Showalter, Outside Member

Author:

Dunham, Noah Paul

Title:

MECHANISTIC INVESTIGATION OF THE DIVERSE IRON AND 2-OXOGLUTARATE-DEPENDENT OXYGENASE SUPERFAMILY

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

enzymology
metalloenzymes
oxygenase
crystallography
structural biology
C-H activation

File:

Download dunham_dissertation_2018.pdf

Committee Members:

Amie Kathleen Boal, Dissertation Advisor/Co-Advisor
Joseph M Bollinger Jr., Committee Chair/Co-Chair
Carsten Krebs, Committee Member
Squire J Booker, Committee Member
Howard M Salis, Outside Member

Author:

Tyndall, Erin Ross

Title:

Translating Membrane Structure into Protein Localization and Function

Graduate Program:

Biomedical Sciences

Keywords:

autophagy
atg3
liposomes
structural biology
SpoVM
curvature sensing
membrane geometry
membrane structure
amphipathic helix
membrane structure sensing

File:

Download ERT_Thesis_022720.pdf

Committee Members:

Fang Tian, Dissertation Advisor/Co-Advisor
Fang Tian, Committee Chair/Co-Chair
John Michael Flanagan Jr., Committee Member
Kristin Ann Eckert, Outside Member
Hong-Gang Wang, Outside Member
George Lucian Moldovan, Committee Member
Ralph Lauren Keil, Program Head/Chair

Author:

Rose, Hannah

Title:

Structural Basis for Metallocofactor Assembly in Class Id Ribonucleotide Reductases

Graduate Program:

Chemistry

Keywords:

ribonucleotide reductase
metalloenzyme
structural biology
crystallography

File:

Download Rose_dissertation.pdf

Committee Members:

Amie Kathleen Boal, Dissertation Advisor/Co-Advisor
Amie Kathleen Boal, Committee Chair/Co-Chair
Joseph Alfred Cotruvo, Jr., Committee Member
Carsten Krebs, Committee Member
Ming Tien, Outside Member
Joseph M Bollinger, Jr., Committee Chair/Co-Chair
Joseph M Bollinger, Jr., Dissertation Advisor/Co-Advisor
Philip C Bevilacqua, Program Head/Chair

Author:

Goetschius, Daniel

Title:

Icosahedral Subparticle Extraction & Correlated Classification: Characterizing Heterogeneities in Icosahedral Viruses

Graduate Program:

Molecular, Cellular and Integrative Biosciences

Keywords:

human papillomavirus
polyomavirus
parvovirus
virology
electron microscopy
zika virus
structural biology
structural virology
cryo electron microscopy
cryoEM

File:

Download Goetschius_v8_no_highlights_corrected.pdf

Committee Members:

Susan Hafenstein, Dissertation Advisor/Co-Advisor
Susan Hafenstein, Committee Chair/Co-Chair
Song Tan, Committee Member
Aron Eliot Lukacher, Committee Member
Matthew T Swulius, Outside Member
Joyce Jose, Committee Member
Melissa Rolls, Program Head/Chair

Author:

Sha, Congzhou

Title:

Manifold Learning in Structural Biology: Docking, Folding, and Simulation

Graduate Program:

Engineering Science and Mechanics

Keywords:

differentiable programming
machine learning
neural networks
structural biology
Lie group
statistical mechanics
molecular dynamics
RNA structure
differential geometry

File:

Download Sha_dissertation-Final.pdf

Committee Members:

Albert Segall, Program Head/Chair
Elizabeth Proctor, Major Field Member
Mehrdad Mahdavi, Outside Field Member
Nikolay Dokholyan, Chair & Dissertation Advisor
Raymond Hohl, Outside Unit Member

Author:

Dinunno, Nadia

Title:

overcoming limitations of Icosahedral reconstructions of viruses

Graduate Program:

Biomedical Sciences

Keywords:

structural biology

File:

Download Thesis_v30_forCommittee_FINAL5.pdf

Committee Members:

Jianming Hu, Co-Chair & Major Field Member
Aron Lukacher, Major Field Member
Matthew Swulius, Outside Unit & Field Member
Joseph Wang, Co-Chair & Dissertation Advisor
Lisa Shantz, Program Head/Chair

Author:

Langley, Caroline

Title:

An Investigation Into the Effects of pH on Human Papillomavirus Capsid Structure and Applications

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

virus
papillomavirus
HPV16
virology
cryo electron microscopy
cryoEM
structural biology

File:

Download Langley_Thesis_Complete.pdf

Committee Members:

Moriah Louise Szpara, Thesis Advisor/Co-Advisor
Joyce Jose, Committee Member
Santhosh Girirajan, Program Head/Chair
Susan Hafenstein, Thesis Advisor/Co-Advisor
Ganesh S Anand, Committee Member

Author:

Das, Sayan

Title:

Icosahedral reconstruction of immature Zika Virus particles using single particle Cryo-electron Microscopy

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

Flavivirus
CryoEM
structural biology
Zika

File:

Download MS_Thesis_SD_Corrected_v2.pdf

Committee Members:

Susan Hafenstein, Thesis Advisor/Co-Advisor
B Tracy Nixon, Committee Member
Santhosh Girirajan, Program Head/Chair
Joyce Jose, Thesis Advisor/Co-Advisor

Author:

Massenburg, Lynnicia

Title:

Putting the Pieces Together: Structural Exploration of Plant Cellulose Synthase Oligomerization and Function

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

Physcomitrium patens
structural biology
cryo-electron microscopy
protein oligomerization
CesA
cellulose synthesis
CSC
rosette
protein flexibility

File:

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Committee Members:

Claire Thomas, Major Field Member
Manish Kumar, Special Member
B Nixon, Chair & Dissertation Advisor
Deb Kelly, Outside Unit & Field Member
Jean-Paul Armache, Major Field Member
Ying Gu, Professor in Charge/Director of Graduate Studies