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Author:

Jaishankar, Amritha

Title:

Molecular characterization of human stem cells

Graduate Program:

Genetics

Keywords:

mesenchymal stem cells
embryonic stem cells
proteomics

File:

Download Jaishankar_A_Dissertation_eTD3.pdf

Committee Members:

Kent Eugene Vrana, Dissertation Advisor/Co-Advisor
Kent Eugene Vrana, Committee Chair/Co-Chair
Sarah Bronson, Committee Member
Jianming Hu, Committee Member
Willard Freeman, Committee Member
Judith Weisz, Committee Member

Author:

Feng, Baomin

Title:

TRANSCRIPTIONAL AND POST TRANSCRIPTIONAL REGULATION IN ARABIDOPSIS REPRODUCTIVE DEVELOPMENT

Graduate Program:

Biology

Keywords:

reproductive
Arabidopsis
anther
proteomics
transcriptional

File:

Download Thesis_Baomin_7-16-08.pdf

Committee Members:

Hong Ma, Committee Chair/Co-Chair
Teh Hui Kao, Committee Member
Richard Cyr, Committee Member
Paula Mc Steen, Committee Member

Author:

Nowelsky, Erin Ashley

Title:

CHARACTERIZATION OF THE PLASMA AND SYNOVIAL FLUID PROTEOMES IN YEARLING HORSES FED HIGH OR LOW STARCH FEED

Graduate Program:

Animal Science

Keywords:

osteochondrosis
nutrition
horse
cartilage
proteomics

File:

Download GradThesisPDFFinal.pdf

Committee Members:

William Staniar, Thesis Advisor/Co-Advisor
William Staniar, Thesis Advisor/Co-Advisor

Author:

Bortner Jr, James

Title:

Proteins as biomarkers for tobacco-induced lung cancer development and chemoprevention

Graduate Program:

Biochemistry and Molecular Biology

Keywords:

biomarkers
proteomics
2D-DIGE
iTRAQ
NNK
mouse model
cigarette smoking
plasma
NSCLC
adenocarcinoma
chemoprevention
selenium

File:

Download Thesis_-_James_Bortner.pdf

Committee Members:

Dr Karam El Bayoumy, Dissertation Advisor/Co-Advisor
Karam E El Bayoumy, Committee Chair/Co-Chair
Arunangshu Das, Committee Member
Gail Lynn Matters, Committee Member
David Spencer Phelps, Committee Member
John Peter Richie Jr., Committee Member
Cara Lynne Schengrund, Committee Member

Author:

Miller, Jennifer Lynn

Title:

Phosphoproteomic Analysis of Ribosomal Proteins: Implications in Translation and Apoptosis

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

ribosomal proteins
apoptosis
phosphorylation
mitochondria
proteomics
translation

File:

Download FINAL_GRAD_SCHOOL.pdf

Committee Members:

Emine Koc, Dissertation Advisor/Co-Advisor
Ming Tien, Committee Member
Robert Allen Schlegel, Committee Member
Wendy Hanna Rose, Committee Member
Erin Elizabeth Sheets, Committee Member
Emine C Koc, Committee Chair/Co-Chair

Author:

Ko, Kyung Dae

Title:

QUANTITATIVE FUNCTIONAL MEASUREMENT OF A PROTEIN USING PHYLOGENETIC PROFILES

Graduate Program:

Integrative Biosciences

Keywords:

the function of protein
proteomics
bioinformatics
RNA binding protein

File:

Download dissertation_kkd_final.pdf

Committee Members:

Randen L Patterson, Dissertation Advisor/Co-Advisor
Randen L Patterson, Committee Chair/Co-Chair
Reka Z Albert, Committee Member
Anton Nekrutenko, Committee Member
Michael N Teng, Committee Member
Damian Van Rossum, Committee Member

Author:

Lull, Melinda Elaine

Title:

Systems Biology Analysis of Abstinence from Cocaine Self-Administration

Graduate Program:

Pharmacology

Keywords:

systems biology
self-administration
abstinence
cocaine
proteomics
microarray

File:

Download Lull_-_Revised_Dissertation.pdf

Committee Members:

Kent Eugene Vrana, Dissertation Advisor/Co-Advisor
Kent Eugene Vrana, Committee Chair/Co-Chair
John Ellis, Committee Member
Willard M Freeman, Ph D, Committee Member
Andras Hajnal, Committee Member
Bruce A Stanley, Committee Member

Author:

Khanna, Mansi Rajendra

Title:

ROLE OF THE SPECTRIN BASED MEMBRANE SKELETON IN PLASMA MEMBRANE PROTEIN PRESENTATION: A PROTEOMIC APPROACH

Graduate Program:

Integrative Biosciences

Keywords:

spectrin
proteomics

File:

Download Mansi_Khanna_dissertation2011.pdf

Committee Members:

Graham Hugh Thomas, Dissertation Advisor/Co-Advisor
Graham Hugh Thomas, Committee Chair/Co-Chair
Richard W Ordway, Committee Member
Hong Ma, Committee Member
Melissa Rolls, Committee Member
Bruce A Stanley, Committee Member

Author:

Fogle, Rachel LaDean

Title:

Sex-dependent molecular alterations during development of alcoholic cardiomyopathy in rats

Graduate Program:

Physiology

Keywords:

meta-analysis
random effects
alcoholic heart muscle disease
mass spectrometry
chronic ethanol
iTRAQ
proteomics

File:

Download Fogle_ThesisFinal.pdf

Committee Members:

Thomas C Vary, Dissertation Advisor/Co-Advisor
Willard M Freeman, Committee Member
Patricia Sue Grigson, Committee Member
Christopher Hollenbeak, Committee Member
Christopher J Lynch, Committee Member
Charles H Lang, Committee Chair/Co-Chair

Author:

Lu, Dihong

Title:

Regulation of Arabidopsis flower and anther development at the transcriptional and post-translational levels

Graduate Program:

Plant Biology

Keywords:

Arabidopsis thaliana
flower
anther
meiosis
transcription factor
E3 ubiquitin ligase
SKP1
proteomics
transcriptomics

File:

Download Dihong_Lu_Dissertation.pdf

Committee Members:

Hong Ma, Dissertation Advisor/Co-Advisor
Teh Hui Kao, Committee Member
Surinder Chopra, Committee Member
Timothy W Mcnellis, Committee Member

Author:

Scully, Erin Denise

Title:

Multitrophic Interactions Contribute to Wood Digestion and Nutritional Ecology in Larval Anoplophora glabripennis (asian Longhorned Beetle)

Graduate Program:

Genetics

Keywords:

metagenomics
transcriptomics
metatranscriptomics
proteomics
lignocellulose
cerambycid
Fusarium solani

File:

Download Dissertation_2013_EScully.final.pdf

Committee Members:

Kelli Hoover, Dissertation Advisor/Co-Advisor
John Edward Carlson, Dissertation Advisor/Co-Advisor
Dawn S Luthe, Committee Chair/Co-Chair
David Michael Geiser, Committee Member
Dr Scott Geib, Special Member

Author:

Castano-Duque, Lina M

Title:

MAIZE DEFENSE RESPONSES AND STRATEGIES AGAINST ABOVEGROUND AND BELOWGROUND INSECTS

Graduate Program:

Plant Biology

Keywords:

maize
Diabrotica virgifera virgifera
Spodotera frugiperda
plant-insect interactions
plant defenses
proteomics
network biology

File:

Download Castano-Duque_Disseration_manuscript_FINAL.pdfDownload Note_S3.1.cysDownload Note_S3.2.cysDownload Table_S3.1.xlsxDownload Table_S3.2.xlsxDownload Table_S3.3.xlsxDownload Table_S3.4.xlsxDownload Note_S4.1.cysDownload Note_S4.2.cysDownload Table_S4.1.xlsxDownload Table_S4.2.xlsxDownload Table_S4.3.xlsxDownload Table_S4.4.xlsx

Committee Members:

Dawn S. Luthe, Dissertation Advisor/Co-Advisor
Dawn S. Luthe, Committee Chair/Co-Chair
Kathleen M. Brown, Committee Member
Réka Albert, Committee Member
Mary Barbercheck, Outside Member

Author:

Sitarik, Ian

Title:

understanding the fundamental principles behind the influences of native and non-native entanglements on protein structure, function, and misfolding

Graduate Program:

Chemistry

Keywords:

Protein folding
protein entanglements
protein misfolding
synonymous mutations
MD simulations
proteomics
non-covalent lasso entanglements

File:

Download Ian_Sitarik_PennState_Thesis_v3.3.pdf

Committee Members:

William Noid, Major Field Member
Arthur Lesk, Outside Unit & Field Member
Mark Hedglin, Major Field Member
Edward O'Brien, Chair & Dissertation Advisor
Kenneth Knappenberger, Program Head/Chair