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Author:

Weyrich, Laura Susan

Title:

Respiratory Pathogen Interactions with the Microbiome: The Molecular Mechanisms to the Ethical Implications

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

microflora
Bordetella
respiratory tract
pathogens
COPD
microbiome
whooping cough
probiotics
Type VI Secretion System

File:

Download 4.9.12__Weyrich_-_FINAL_Dissertation_PDF.pdf

Committee Members:

Eric Thomas Harvill, Dissertation Advisor/Co-Advisor
Eric Thomas Harvill, Committee Chair/Co-Chair
Jean Elnora Brenchley, Committee Member
Jesse Ballenger, Special Member
Robert Paulson, Committee Member
Richard John Frisque, Committee Member

Author:

Steinway, Steven Nathaniel

Title:

Predictive Network Modeling And Experimentation In Complex Biological Systems: Applications To Cancer And Infectious Disease

Graduate Program:

Molecular Medicine

Keywords:

Network analysis
dynamic modeling
discrete dynamic modeling
cancer
microbiome
tumor invasion & metastasis

File:

Download Steinway-Thesis-Full-5-20-15.pdf

Committee Members:

Reka Z Albert, Dissertation Advisor/Co-Advisor
"Thomas P Loughran, Jr", Dissertation Advisor/Co-Advisor
Reka Z Albert, Committee Chair/Co-Chair
David J Feith, Committee Member
James Riley Broach, Committee Member
Diane M Thiboutot, Committee Member

Author:

Dannenberg, Richard Pierce

Title:

Characterization and Oil Response of the Deep Sea Coral-associated Microbiome

Graduate Program:

Biology

Keywords:

oil exposure
deep-sea
Leiopathes glaberrima
microbiome
transcriptome
high-throughput sequencing
Illumina
bacteria

File:

Download DannenbergThesis.pdf

Committee Members:

Iliana Brigitta Baums, Thesis Advisor/Co-Advisor
Charles Raymond Fisher Jr., Thesis Advisor/Co-Advisor

Author:

Dodson, Brittany Lee

Title:

IT’S THE LITTLE THINGS: EXPLORING THE EFFECTS OF BACTERIA ON MOSQUITO-BORNE VIRUSES

Graduate Program:

Entomology

Keywords:

mosquito
microbiome
bacteria
viruses
infectious diseases
wolbachia

File:

Download Dodson_Dissertation2018.pdf

Committee Members:

Jason Rasgon, Dissertation Advisor/Co-Advisor
Jason Rasgon, Committee Chair/Co-Chair
Matthew Brian Thomas, Committee Member
Kelli Hoover, Committee Member
Marilyn J Roossinck, Outside Member

Author:

Cai, Jingwei

Title:

METABOLOMICS REVEALS THE IMPACT OF XENOBIOTICS ON THE HOST-METABOLITES-MICROBIOME INTERACTION

Graduate Program:

Molecular Toxicology

Keywords:

microbiome
metabolomics
short chain fatty acid
bile acid
xenobiotics
LC-MS
GC-MS
NMR
TEMPOL
in vitro

File:

Download Jingwei_Cai_PhD_thesis.pdf

Committee Members:

Andrew D. Patterson, Dissertation Advisor/Co-Advisor
Andrew D. Patterson, Committee Chair/Co-Chair
Gary H. Perdew, Committee Member
Curtis J. Omiecinski, Committee Member
Matam Vijay-Kumar, Outside Member

Author:

Galindo-Castaneda, Tania

Title:

Microbial tradeoffs of root cortical aerenchyma in maize

Graduate Program:

Horticulture

Keywords:

RhizosphereArbuscular mycorrhiza
Fusarium verticillioides
root anatomy
root rot
Zea mays
Arbuscular mycorrhiza Fusarium verticillioides
arbuscular mycorrhiza
rhizobacteria
phosphorus
nitrogen
microbiome
root phenotype

File:

Download AMC-LCA_movies_TGC_for_publication_corrected.mp4Download File_S1_dissertation.xlsxDownload TGC_Dissertation_Draft_GradSchool_July_2018_signatures.pdf

Committee Members:

Jonathan P. Lynch, Dissertation Advisor/Co-Advisor
Jonathan P. Lynch, Committee Chair/Co-Chair
Kathleen M. Brown, Committee Member
Gretchen A. Kuldau, Committee Member
Mary Ann Victoria Bruns, Outside Member
Gregory W. Roth, Committee Member

Author:

Sheen, Emily Marie

Title:

An Exploration of Mixed Effects Models for Analysis of Infant Weight Gain Trajectories

Graduate Program:

Statistics

Keywords:

generalized linear mixed models
statistics
biostatistics
microbiome
INSIGHT
mixed effects random forest

File:

Download EmilySheen-MS-Thesis.pdf

Committee Members:

Matthew Logan Reimherr, Thesis Advisor/Co-Advisor
Ephraim Mont Hanks, Committee Member
Runze Li, Committee Member

Author:

Vohsen, Samuel

Title:

The Chemical and Microbial Ecology of Deep-Sea Corals

Graduate Program:

Biology

Keywords:

deep-sea
coral
microbiome
apicomplexans
sulfur-oxidizers
SUP05
chemoautotrophy
Mollicutes
symbionts
metabolomics
metagenome

File:

Download Final_dissertation_Vohsen.pdf

Committee Members:

Charles Raymond Fisher, Jr., Dissertation Advisor/Co-Advisor
Roberto Iglesias-Prieto, Committee Chair/Co-Chair
Iliana Brigitta Baums, Dissertation Advisor/Co-Advisor
Tracy Langkilde, Program Head/Chair
Andrew David Patterson, Outside Member

Author:

Bharadwaj, Anahita

Title:

Microbial Adaptation and Cotreatment-Enhanced Biomass Solubilization in Lignocellulosic Anaerobic Digestion

Graduate Program:

Agricultural and Biological Engineering

Keywords:

anaerobic digestion
acidogenic digestion
microbiome
mixed culture
fermentation
biomass
lignocellulose
cotreatment
bioenergy
biogas
biomethane
recalcitrance
milling
bioreactor
BioMethane Potential test

File:

Download 2020.07.Dissertation.Final.ForLibrary.AnahitaBharadwaj.pdf

Committee Members:

Tom Richard, Dissertation Advisor/Co-Advisor
Tom Richard, Committee Chair/Co-Chair
John Michael Regan, Committee Member
Ali Demirci, Committee Member
Terrence Hugh Bell, Outside Member
Paul Heinz Heinemann, Program Head/Chair

Author:

Sutherland, Jeremy

Title:

The Impacts of Genotype-by-Environment Interactions on Switchgrass Rhizosphere Microbiome Composition and Insights for Breeding in Sustainable Agriculture

Graduate Program:

Bioinformatics and Genomics (PhD)

Keywords:

switchgrass
microbiome
genotype-by-environment interactions
microbial heritability

File:

Download Thesis_formatted_JS_05242023.pdf

Committee Members:

Jia Li, Outside Unit & Field Member
Terrence Bell, Co-Chair & Dissertation Advisor
Jesse Lasky, Co-Chair & Dissertation Advisor
Emily Davenport, Major Field Member
George Perry, Program Head/Chair