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Author:

Dutta, Arnob

Title:

UNDERSTANDING HOW DHH1 AND CCR4-NOT COMPLEX REGULATE mRNA METABOLISM IN YEAST

Graduate Program:

Cell and Developmental Biology

Keywords:

transcription
mRNA

File:

Download Arnob_Dutta_PhD_thesis_PSU_Aug_2010.pdf

Committee Members:

Joseph C. Reese, Dissertation Advisor/Co-Advisor
Joseph C. Reese, Committee Chair/Co-Chair
David Scott Gilmour, Committee Member
Craig Eugene Cameron, Committee Member
Yanming Wang, Committee Member
Philip C. Bevilacqua, Committee Member

Author:

Han, Jian

Title:

MECHANISMS CONTROLLING IRON MOBILIZATION DURING IRON DEFICIENCY IN RAT BRAIN

Graduate Program:

Nutrition

Keywords:

mRNA
ferritin
transferrin receptor
brain
iron-related proteins
iron deficiency
rat
transferrin

File:

Download thesis.pdf

Committee Members:

John Elliot Beard, Committee Chair/Co-Chair
Jonathan R Day, Committee Member
Byron C Jones, Committee Member
James Robert Connor, Committee Member
Michael Henry Green, Committee Member

Author:

Montani, Aaron William

Title:

The chicken model of ovarian cancer: A novel TP53 mRNA variant found in healthy and cancerous tissue

Graduate Program:

Physiology

Keywords:

ovarian cancer
chicken
gallus
TP53
P53
mRNA
variant
splicing
deletion

File:

Download 1-Aaron_Montani_Thesis_Finished.pdf

Committee Members:

Ramesh Ramachandran, Thesis Advisor/Co-Advisor
Joy Lee Pate, Thesis Advisor/Co-Advisor
Alan Leslie Johnson, Thesis Advisor/Co-Advisor

Author:

Cetnar, Daniel

Title:

Predicting Gene Expression For Robust Genetic System Design

Graduate Program:

Chemical Engineering

Keywords:

mRNA
RNA Decay
NGS
Synthetic Biology
Gene Expression
RNase
Machine Learning
Modeling

File:

Download Daniel_Cetnar_Dissertation_final.pdf

Committee Members:

Andrew Zydney, Major Field Member
Howard Salis, Chair & Dissertation Advisor
Phillip Savage, Major Field Member
Philip Bevilacqua, Outside Unit & Field Member
Seong Han Kim, Program Head/Chair

Author:

Hossain, Ayaan

Title:

Advanced algorithms for the design and analysis of synthetic genetic parts

Graduate Program:

Bioinformatics and Genomics (PhD)

Keywords:

automated
design
synthetic
genetic
parts
combinatorial
optimization
machine
learning
algorithm
promoter
mRNA
transcription
translation
decay
repression
CRISPR
repeats
interference
graph
theory
path
finding
nonrepetitive
repetitive
gene
synthesis
assembly
oligopool
discovery
barcodes
primers
counting
NGS
reads
classifier
classification
regressor
regression
random
forest
LASSO
ridge
homologous
recombination
instability
tuning
efficiency
plasmids
genome
engineering
degenerate
IUPAC
vertex
cover
independent
set
initiation

File:

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Committee Members:

Paul Babitzke, Outside Unit Member
Howard Salis, Chair & Dissertation Advisor
Costas Maranas, Major Field Member
Reka Albert, Outside Field Member
George Perry, Program Head/Chair