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Author:

Peterson, Ryan

Title:

A PHYLOGENETIC ANALYSIS OF BOVINE VIRAL DIARRHEA VIRUS SUBTYPES IN DIAGNOSTIC SAMPLES FROM CATTLE IN PENNSYLVANIA

Graduate Program:

Pathobiology

Keywords:

genome
virus
bovine
pestivirus
Phylogenetic analysis
vaccine
subtype
clinical signs
diagnostic
veterinary
1a
1b
BVDV
2a
2b
mutation
disease

File:

Download Ryans_Masters_Thesis_041610_final.pdf

Committee Members:

Bhushan M Jayarao, Thesis Advisor/Co-Advisor
Bhushan M Jayarao, Thesis Advisor/Co-Advisor

Author:

Cote, Rebecca Ann

Title:

Genomic Structure of an E. coli O157:H7 Super-Shedder Isolate with Increased Adherence to Bovine RSE Cells

Graduate Program:

Immunology and Infectious Diseases

Keywords:

E. coli
super-shedders
genome
sequencing
RSE cells

File:

Download Thesis_Cote_Rebecca.pdf

Committee Members:

Vivek Kapur, Thesis Advisor/Co-Advisor
Subhashinie Kariyawasam, Thesis Advisor/Co-Advisor
Edward G Dudley, Thesis Advisor/Co-Advisor
Chitrita Debroy, Thesis Advisor/Co-Advisor

Author:

Hossain, Ayaan

Title:

Advanced algorithms for the design and analysis of synthetic genetic parts

Graduate Program:

Bioinformatics and Genomics (PhD)

Keywords:

automated
design
synthetic
genetic
parts
combinatorial
optimization
machine
learning
algorithm
promoter
mRNA
transcription
translation
decay
repression
CRISPR
repeats
interference
graph
theory
path
finding
nonrepetitive
repetitive
gene
synthesis
assembly
oligopool
discovery
barcodes
primers
counting
NGS
reads
classifier
classification
regressor
regression
random
forest
LASSO
ridge
homologous
recombination
instability
tuning
efficiency
plasmids
genome
engineering
degenerate
IUPAC
vertex
cover
independent
set
initiation

File:

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Committee Members:

Paul Babitzke, Outside Unit Member
Howard Salis, Chair & Dissertation Advisor
Costas Maranas, Major Field Member
Reka Albert, Outside Field Member
George Perry, Program Head/Chair