1. Bridging Paired-end RNA-seq reads Open Access Author: Li, Xiang Title: Bridging Paired-end RNA-seq reads Graduate Program: Computer Science and Engineering Keywords: RNA-seqtranscript assemblyde Bruijn graph File: Download Final.pdf Committee Members: Mingfu Shao, Thesis Advisor/Co-AdvisorChitaranjan Das, Program Head/ChairPaul Medvedev, Committee Member
2. Compression Algorithms for de Bruijn Graphs and Uncovering Hidden Assembly Artifacts Open Access Author: Rahman, Amatur Title: Compression Algorithms for de Bruijn Graphs and Uncovering Hidden Assembly Artifacts Graduate Program: Computer Science and Engineering Keywords: de Bruijn graphcompressionk-mer setcolored de Bruijn graphassemblyunitigunitig algorithmassembly artifactbidirected de Bruijn graphpalindromic unitig File: Download psu_phd_amatur.pdf Committee Members: Chitaranjan Das, Program Head/ChairDavid Koslicki, Major Field MemberPaul Medvedev, Chair & Dissertation AdvisorFrancesca Chiaromonte, Outside Unit & Field MemberMingfu Shao, Major Field Member
