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Author:

Klatt, Alicia J

Title:

Cellular Signals Suppress HIV-1 Transcription By Interfering With Chromatin Remodeling and Polymerase Activation

Graduate Program:

Pathobiology

Keywords:

RNA Polymerase II
Transcription
Macrophages
HIV
NELF
RON

File:

Download ThesisMaster3.pdf

Committee Members:

Andrew Thomas Henderson, Committee Chair/Co-Chair
Avery August, Committee Member
Pamela Correll, Committee Member
Richard John Frisque, Committee Member
David Scott Gilmour, Committee Member

Author:

Irvin, Jordan Davis

Title:

GENOME-WIDE FUNCTIONAL ANALYSIS OF TAF1 AND MOT1, REGULATORS OF THE TATA BOX BINDING PROTEIN IN SACCHAROMYCES CEREVISIAE

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

TBP
TAF1
MOT1
Transcription
Microarray

File:

Download JordanIrvinThesis2.pdf

Committee Members:

Benjamin Franklin Pugh, Committee Chair/Co-Chair
Song Tan, Committee Member
Richard John Frisque, Committee Member
Jerry L Workman, Committee Member
Blake Peterson, Committee Member

Author:

Reichlen, Matthew James

Title:

Functional Assessment of Transcriptional Regulation in the Methanogen, Methanosarcina acetivorans

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

Archaea
Transcription
Methanogen
Methanosarcina
acetivorans

File:

Download Final_thesis_revised.pdf

Committee Members:

James Gregory Ferry, Dissertation Advisor/Co-Advisor
James Gregory Ferry, Committee Chair/Co-Chair
Katsuhiko Murakami, Committee Chair/Co-Chair
Sarah Ellen Ades, Committee Member
Benjamin Franklin Pugh, Committee Member
Philip C. Bevilacqua, Committee Member

Author:

Natarajan, Malini

Title:

REGULATION OF HIV TRANSCRIPTION IN T CELLS

Graduate Program:

Immunology and Infectious Diseases

Keywords:

Pcf11
Transcription
NELF
HIV
CD28
T cell activation

File:

Download Malini_thesis_FINAL.pdf

Committee Members:

Avery August, Dissertation Advisor/Co-Advisor
Andrew Thomas Henderson, Committee Member
Avery August, Committee Chair/Co-Chair
Anthony Paul Schmitt, Committee Member
Pamela Hankey Giblin, Committee Member
David Scott Gilmour, Committee Member

Author:

Stefanik, Laura Michelle

Title:

Regulating a Paused Polymerase: The Role of Heat Shock Factor, and the Correlation Between Polymerase Pausing and Synchronous Patterns of Transcriptional Induction

Graduate Program:

Genetics

Keywords:

RNA Pol II Pausing
Heat Shock Factor
HSF
Transcription
Synchrony
Promoter

File:

Download Laura_Stefanik_Thesis_edited_May_1.pdf

Committee Members:

David Scott Gilmour, Thesis Advisor/Co-Advisor

Author:

Mondal, Smarajit

Title:

Regulation of Transcription by Nusa And Nusg in Bacillus subtilis

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

Transcription
Termination
NusA
RNA-seq
3' end-mapping
Attenuation

File:

Download Smarajit_Mondal_Dissertation.pdf

Committee Members:

Paul Lee Babitzke, Dissertation Advisor/Co-Advisor
Paul Lee Babitzke, Committee Chair/Co-Chair
Katsuhiko Murakami, Committee Member
David Scott Gilmour, Committee Member
Joseph C. Reese, Committee Member
Philip C. Bevilacqua, Committee Member

Author:

Fisher, Michael James

Title:

AN IN VITRO BIOCHEMICAL STUDY OF THE DROSOPHILA NEGATIVE ELONGATION FACTOR

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

Transcription
Pausing
NELF
Drosophila
RNA Polymerase II
Gene regulation

File:

Download Michael_J_Fisher_Dissertation_Final.pdf

Committee Members:

David Gilmour, Dissertation Advisor/Co-Advisor
Paul Babitzke, Committee Chair/Co-Chair
Joseph Reese, Committee Member
Katsuhiko Murakami, Committee Member
Michael Axtell, Outside Member

Author:

Baumann, Douglas G

Title:

CORE PROMOTER FUNCTION IN TRANSCRIPTIONAL REGULATION OF CONSTITUTIVELY EXPRESSED GENES IN DROSOPHILA

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

Promoter
Transcription
Drosophila
Initiation
Glutathione
Motif 1
Pausing
GST
Housekeeping
TRF2
TBP-related factors
TBP
TFIID
DREF
M1BP
DRE
Motif 6
TADs
GFZF

File:

Download Dissertation_Baumann__Final.pdf

Committee Members:

David Scott Gilmour, Dissertation Advisor/Co-Advisor
David Scott Gilmour, Committee Chair/Co-Chair
Joseph C. Reese, Committee Member
Lu Bai, Committee Member
Tae-Hee Lee, Outside Member
Shaun A Mahony, Committee Member

Author:

Shin, Yeonoh

Title:

Structural Basis of Bacterial Transcription: Investigation of Mechanisms of Reiterative Transcription and Ribosomal RNA Transcription by X-ray Crystallography and Cryo-Electron Microscopy

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

Transcription
RNA polymerase
X-ray crystallography
Cryo-electron microscopy
Ribosomal RNA
Reiterative transcription

File:

Download YeonohShin_DissertationFinal.pdf

Committee Members:

Katsuhiko Murakami, Dissertation Advisor/Co-Advisor
Katsuhiko Murakami, Committee Chair/Co-Chair
Paul Babitzke, Committee Member
David Scott Gilmour, Committee Member
Philip C Bevilacqua, Outside Member
Lu Bai, Committee Member
Wendy Hanna-Rose, Program Head/Chair

Author:

Lafleur, Travis

Title:

Predictive Models for Gene Expression Engineering

Graduate Program:

Chemical Engineering

Keywords:

Transcription
Machine Learning
Biological Engineering
Synthetic Biology

File:

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Committee Members:

Andrew Zydney, Major Field Member
Howard Salis, Chair & Dissertation Advisor
Edward O'Brien, Outside Unit & Field Member
Costas Maranas, Major Field Member
Robert Rioux, Professor in Charge/Director of Graduate Studies

Author:

Jayasinghe, Kattadige Oshadhi

Title:

Regulation of gene expression by factor-dependent RNA polymerase pausing in Bacillus subtilis

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

Transcription
RNA polymerase pausing
NusG
NusA
Riboswitches
Gene expression regulation
Post-transcription initiation regulatory mechanisms
Bacterial transcription
RNET-seq
Attenuation
Transcription elongation factors

File:

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Committee Members:

Santhosh Girirajan, Program Head/Chair
Paul Babitzke, Chair & Dissertation Advisor
Howard Salis, Outside Unit & Field Member
Katsuhiko Murakami, Major Field Member
Emily Weinert, Major Field Member
Jordan Bisanz, Major Field Member
Philip Bevilacqua, Major Field Member