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1. DATA MINING AND NETWORK MINING APPROACH FOR SIGNIFICANT PROTEIN IDENTIFICATION IN GASTRIC BYPASS SURGERY

open_access
Open Access
Author:
Madireddy, Manini
Title:
DATA MINING AND NETWORK MINING APPROACH FOR SIGNIFICANT PROTEIN IDENTIFICATION IN GASTRIC BYPASS SURGERY
Graduate Program:
Industrial Engineering
Keywords:
Mass Spectrometry
Diabetes
Gene Filtering
Complex Networks
Systems Biology
Biological Networks
Protein Interaction Network
Bariatric Surgery
File:
Download Madireddy_Final_Thesis.pdf
Committee Members:
Andrew Scanlon, Thesis Advisor/Co-Advisor
Soundar Rajan Tirupatikumara, Thesis Advisor/Co-Advisor

2. Uncovering hidden genomic features using computational approaches

open_access
Open Access
Author:
Chung, Wen-Yu
Title:
Uncovering hidden genomic features using computational approaches
Graduate Program:
Computer Science and Engineering
Keywords:
Computational Biology
Bioinformatics
Systems Biology
Molecular Evolution
File:
Download wychung-Dissertation.pdf
Committee Members:
Webb Colby Miller, Dissertation Advisor/Co-Advisor
Webb Colby Miller, Committee Chair/Co-Chair
Anton Nekrutenko, Committee Member
Raj Acharya, Committee Member
Padma Raghavan, Committee Member
Reka Z Albert, Committee Member

3. Network-based dynamic modeling and control strategies in complex diseases

open_access
Open Access
Author:
Gomez Tejeda Zanudo, Jorge
Title:
Network-based dynamic modeling and control strategies in complex diseases
Graduate Program:
Physics
Keywords:
Systems Biology
Complex Networks
Network models
Cancer
File:
Download Dissertation-JGTZanudo-Final.pdf
Committee Members:
Reka Z Albert, Dissertation Advisor/Co-Advisor
Reka Z Albert, Committee Chair/Co-Chair
Dezhe Jin, Committee Member
Lu Bai, Committee Member
Timothy Reluga, Committee Member
Richard Wallace Robinett, Special Member

5. Modeling Metabolism and Regulation to Facilitate Strain Characterization and Design

open_access
Open Access
Author:
Mueller, Thomas J
Title:
Modeling Metabolism and Regulation to Facilitate Strain Characterization and Design
Graduate Program:
Chemical Engineering
Keywords:
Optimization
Cyanobacteria
Systems Biology
Computational Biology
Metabolic Modeling
File:
Download Mueller_thesis_final.pdf
Committee Members:
Costas D Maranas, Dissertation Advisor/Co-Advisor
Costas D Maranas, Committee Chair/Co-Chair
Phillip E Savage, Committee Member
Manish Kumar, Committee Member
James Gregory Ferry, Outside Member

6. The contribution of dynamic neuroinflammatory states in Alzheimer’s disease

open_access
Open Access
Author:
Kuhn, Madison
Title:
The contribution of dynamic neuroinflammatory states in Alzheimer’s disease
Graduate Program:
Biomedical Engineering
Keywords:
Systems Biology
Alzheimer's Disease
Neuroinflammation
Immunometabolism
Cytokine Signaling
Cerebral Organoids
File:
Download final_dissertation_kuhn.pdf
Committee Members:
Elizabeth Proctor, Chair & Dissertation Advisor
Xiaojun Lian, Major Field Member
James Connor, Outside Field Member
Bruce Gluckman, Outside Unit Member
Irina Elcheva, Outside Field Member
Justin Pritchard, Major Field Member
Yuguo Lei, Professor in Charge/Director of Graduate Studies

7. Relationship Between Network Structure and Emergent Properties in Biological Network Control and Network Hyperuniformity

restricted_to_institution
Restricted (Penn State Only)
Author:
Newby, Eli
Title:
Relationship Between Network Structure and Emergent Properties in Biological Network Control and Network Hyperuniformity
Graduate Program:
Physics
Keywords:
Network Science
Hyperuniformity
Network Structure
Complex Systems
Systems Biology
Control Theory
File:
Login to Download
Committee Members:
Lingzhou Xue, Outside Unit & Field Member
Dezhe Jin, Major Field Member
David Radice, Major Field Member
Reka Albert, Chair & Dissertation Advisor
Irina Mocioiu, Professor in Charge/Director of Graduate Studies