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Author:

Imperio, Caesar Gerald

Title:

From behavior to epigenetics: Individual differences in heroin addiction

Graduate Program:

Neuroscience

Keywords:

Addiction
Heroin
Reward
Epigenetics
Enrichment
RNA-seq

File:

Download Final_Imperio_Dissertation_.pdf

Committee Members:

Patricia Sue Grigson Kennedy, Dissertation Advisor/Co-Advisor
Scott C Bunce, Committee Member
Willard M Freeman, Special Member
Robert G Levenson, Committee Member
Victor J Ruiz Velasco, Committee Member

Author:

Mondal, Smarajit

Title:

Regulation of Transcription by Nusa And Nusg in Bacillus subtilis

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

Transcription
Termination
NusA
RNA-seq
3' end-mapping
Attenuation

File:

Download Smarajit_Mondal_Dissertation.pdf

Committee Members:

Paul Lee Babitzke, Dissertation Advisor/Co-Advisor
Paul Lee Babitzke, Committee Chair/Co-Chair
Katsuhiko Murakami, Committee Member
David Scott Gilmour, Committee Member
Joseph C. Reese, Committee Member
Philip C. Bevilacqua, Committee Member

Author:

Witmer, Evan Brooke

Title:

RNA-SEQ REVEALS NOVEL REGULATORS IN HUMAN STEM CELL DIFFERENTIATION

Graduate Program:

Bioengineering

Keywords:

stem cell
stem cells
pluripotent
differentiation
mesoderm
mesodermal
RNA-seq
RNA-sequencing
FOXB1
ARL4A
PMAIP1

File:

Download EvanWitmerThesis.pdf

Committee Members:

Xiaojun Lance Lian, Thesis Advisor/Co-Advisor

Author:

Schieffer, Kathleen Marie

Title:

Integrative Analysis of the Microbiome and Human Intestinal Transcriptome: Implications for the Pathogenesis of Diverticulitis

Graduate Program:

Biomedical Sciences

Keywords:

RNA-seq
Microbiome
Diverticular disease
Immune system
16S rRNA

File:

Download Schieffer_Final_Thesis.pdf

Committee Members:

Walter Alex Koltun, Dissertation Advisor/Co-Advisor
Walter Alex Koltun, Committee Chair/Co-Chair
Shannon Leanne Kelleher, Committee Member
Gregory Steven Yochum, Committee Member
Regina Lamendella, Outside Member
Matam Vijay Kumar, Committee Member

Author:

Roberts, Catherine Elizabeth

Title:

Gene Expression of Growth Plate Formation in Mouse Metatarsals

Graduate Program:

Anthropology

Keywords:

metatarsals
growth plate
bone development
vertebrate evolution
anthropology
biology
gene expression
RNA-seq

File:

Download Thesis_Masters_EDIT.pdf

Committee Members:

Philip Reno, Thesis Advisor/Co-Advisor
Timothy Michael Ryan, Committee Member

Author:

Wittmeyer, Kameron Thomas

Title:

Over expression of a novel gene responsible for Unstable factor for orange1 phenotypes in maize causes widespread stress and alters flavonoid metabolism

Graduate Program:

Plant Biology

Keywords:

Ufo1
Ufo1-1
Unstable factor for orange1
Maize genetics
RNA-seq
maize epigenetics
paramutation
p1
pericarp color1
P1-wr

File:

Download Kam_Dissertation_final.pdf

Committee Members:

Surinder Chopra, Dissertation Advisor/Co-Advisor
Surinder Chopra, Committee Chair/Co-Chair
Dawn Luthe, Committee Member
Majid R Foolad, Committee Member
Michael Axtell, Outside Member

Author:

Cui, Jin

Title:

Insights into the epigenetic regulation of Unstable factor for orange1 in maize

Graduate Program:

Plant Biology

Keywords:

Unstable factor for orange1
Maize genetics
RNA-seq
small-RNA
DNA methylation
alternative splicing

File:

Download Final_submission_JinCui.pdf

Committee Members:

Surinder Chopra, Dissertation Advisor/Co-Advisor
Surinder Chopra, Committee Chair/Co-Chair
Majid R Foolad, Committee Member
Jesse R Lasky, Outside Member
David Robert Huff, Committee Member
Teh-Hui Kao, Program Head/Chair

Author:

Li, Xiang

Title:

Bridging Paired-end RNA-seq reads

Graduate Program:

Computer Science and Engineering

Keywords:

RNA-seq
transcript assembly
de Bruijn graph

File:

Download Final.pdf

Committee Members:

Mingfu Shao, Thesis Advisor/Co-Advisor
Chitaranjan Das, Program Head/Chair
Paul Medvedev, Committee Member

Author:

Benson, Christopher

Title:

Genomic and transcriptomic insight into the evolution and breeding of turfgrass species, Poa annua and Bouteloua dactyloides

Graduate Program:

Plant Biology

Keywords:

Poa annua
turfgrass
genetics
genomics
polyploidy
sequencing
breeding
annual bluegrass
annual meadowgrass
pistil smut
Bouteloua dactyloides
Buffalograss
Salmacisia buchloëana
the genome balance hypothesis
dioecy
tilletia
golf
putting green
homoeolog
polyploid plasticity hypothesis
chromosome modification
chromosome restructuring
fractionation
retrotransposon
synteny
RNA-seq
comparative genomics
pan-genome
transposable element
host manipulation
amphihapoid
haploid plants
allotetraploid
DNA methylation
Poa infirma
Poa supina

File:

Download Benson_dissertation.pdf

Committee Members:

Sally Mackenzie, Major Field Member
David Huff, Chair & Dissertation Advisor
Claude Depamphilis, Outside Field Member
Gary Felton, Outside Unit Member
Teh-Hui Kao, Program Head/Chair

Author:

Seemiller, Laurel

Title:

Interstrain variability in hippocampal learning and gene expression after acute adolescent alcohol exposure

Graduate Program:

Molecular, Cellular, and Integrative Biosciences

Keywords:

Genetics
Alcohol
Inbred
Mouse
Learning
Memory
Fear conditioning
RNA-seq
DBA/2J
Strain

File:

Login to Download

Committee Members:

Nikki Crowley, Outside Field Member
Janine Kwapis, Outside Unit Member
Thomas Gould, Chair & Dissertation Advisor
Helen Kamens, Major Field Member
Melissa Rolls, Program Head/Chair
David Vandenbergh, Major Field Member