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Author:

Nunes, Marcus Alexandre

Title:

Analysis of RNA-Seq Data with Excess of Zeros

Graduate Program:

Statistics

Keywords:

generalized linear models
RNA-Seq
design of experiments
optimal

File:

Download marcus_nunes_thesis.pdf

Committee Members:

James Landis Rosenberger, Dissertation Advisor/Co-Advisor
Yu Zhang, Committee Chair/Co-Chair
Qunhua Li, Committee Member
John Edward Carlson, Special Member

Author:

Clayman, Carly

Title:

RNA Sequencing and Clinical Data Analysis of Multiple Cancer Types on the National Cancer Institute's Genomic Data Commons

Graduate Program:

Engineering Science

Keywords:

RNA Sequencing
Genomic Data Commons
TCGA
Prostate Cancer
Survival Analysis
Boruta Random Forest
Feature Selection
Clustering Analysis
Principal Component Analysis
Clinical Data
RNA-Seq
Cancer
Landmark Genes

File:

Download MS_Thesis_Clayman_2019.pdf

Committee Members:

Satish Mahadevan Srinivasan, Thesis Advisor/Co-Advisor
Raghu Sangwan, Committee Member
Youakim Badr, Committee Member
Colin Neill, Program Head/Chair

Author:

Islam, Md Tariqul

Title:

Understanding and development of environmentally friendly strategies to ameliorate plant stress

Graduate Program:

Plant Pathology

Keywords:

Biostimulant
photosensitizer
phytohormones
abiotic-biotic stresses
RNA-Seq

File:

Download MdIslam_Dissertation_final_03-18-23.pdf

Committee Members:

Cristina Rosa, Chair & Dissertation Advisor
Timothy Mcnellis, Major Field Member
Surinder Chopra, Outside Unit & Field Member
Maria Del Mar Jimenez Gasco, Program Head/Chair
Yinong Yang, Major Field Member

Author:

Silva Gallardo, Constanza Paulina

Title:

The impact of nicotine exposure and cigarette smoking on gene expression and behavior from a translational perspective

Graduate Program:

Biobehavioral Health

Keywords:

gene expression
genomics
smoking
nicotine
translational
cigarette smoking
reduced nicotine-content cigarettes
RNA-Seq
DNA methylation
sex differences

File:

Download Silva-Dissertation.pdfDownload Appendix-A_Tables.zipDownload Appendix-B_Tables.zipDownload Appendix-C_Tables.zip

Committee Members:

Dajiang Liu, Outside Unit Member
David Vandenbergh, Major Field Member
Steven Branstetter, Outside Field Member
Helen Kamens, Chair & Dissertation Advisor
Thomas Gould, Program Head/Chair