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Author:

Wall, P. Kerr

Title:

COMPUTATIONAL TOOLS AND THEIR APPLICATIONS IN PLANT COMPARATIVE GENOMICS

Graduate Program:

Biology

Keywords:

Transcriptomics
Phylogenomics
Evolutionary Biology
Gene Family Evolution
Comparative Genomics
Computational Biology
Bioinformatics
Next Generation Sequencing

File:

Download P._Kerr_Wall_PhD_Dissertation.pdf

Committee Members:

Claude Walker Depamphilis, Committee Chair/Co-Chair
Webb Colby Miller, Committee Chair/Co-Chair
Hong Ma, Committee Member
Naomi S Altman, Committee Member
John Edward Carlson, Committee Member

Author:

Jiao, Yuannian

Title:

Phylogenomic analysis of ancient genome duplications in the history of plants

Graduate Program:

Plant Biology

Keywords:

Whole genome duplication
Phylogenomics

File:

Download Yuannian_thesis_29AUG.pdf

Committee Members:

Claude Walker Depamphilis, Dissertation Advisor/Co-Advisor
Claude Walker Depamphilis, Committee Chair/Co-Chair
Hong Ma, Committee Member
John Edward Carlson, Committee Member
Webb Colby Miller, Committee Member
Naomi S Altman, Committee Member

Author:

Wafula, Eric

Title:

Computational methods for comparative genomics of non-model species: a case study in the parasitic plant family Orobanchaceae

Graduate Program:

Biology

Keywords:

Computational biology
Evolutionary biology
Bioinformatics
Comparative genomics
Next-generation sequencing
de novo assembly
Genome annotation
Gene expression
Whole genome duplication
Gene duplication
Phylogenomics
Ancestral reconstruction
Transcriptomics
Orthogroups
Gene family evolution
Parasitic plants
Orobanchaceae
Striga

File:

Download Eric_wafula_dissertation_final_submission.pdf

Committee Members:

Claude Walker Depamphilis, Dissertation Advisor/Co-Advisor
James Harold Marden, Committee Chair/Co-Chair
Istvan Albert, Outside Member
Naomi S Altman, Outside Member
Stephen Wade Schaeffer, Program Head/Chair

Author:

Timilsena, Prakash Raj

Title:

Phylogenomics and comparative transcriptomic analyses of the monocots

Graduate Program:

Biology

Keywords:

Phylogenomics
Plant Biology
Taxonomy
Systematics
Monocots
Genomics
Bioinformatics
Botany
Evolution
Comparative Genomics
Evolutionary Genomics
Transcriptomics
RNASeq
Gene Annotation

File:

Download Supplementary_File_14Apr_2020.xlsxDownload PhD_Dissertation_2020_Prakash_Raj_Timilsena.pdf

Committee Members:

Claude Walker Depamphilis, Dissertation Advisor/Co-Advisor
Kateryna Dmytrivna Makova, Committee Chair/Co-Chair
Heather M Hines, Committee Member
John Edward Carlson, Outside Member
Tracy Langkilde, Program Head/Chair