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Author:

Cetnar, Daniel

Title:

Predicting Gene Expression For Robust Genetic System Design

Graduate Program:

Chemical Engineering (PHD)

Keywords:

mRNA
RNA Decay
NGS
Synthetic Biology
Gene Expression
RNase
Machine Learning
Modeling

File:

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Committee Members:

Andrew Zydney, Major Field Member
Howard Salis, Chair & Dissertation Advisor
Phillip Savage, Major Field Member
Philip Bevilacqua, Outside Unit & Field Member
Seong Han Kim, Program Head/Chair

Author:

Hossain, Ayaan

Title:

Advanced algorithms for the design and analysis of synthetic genetic parts

Graduate Program:

Bioinformatics and Genomics (PhD)

Keywords:

automated
design
synthetic
genetic
parts
combinatorial
optimization
machine
learning
algorithm
promoter
mRNA
transcription
translation
decay
repression
CRISPR
repeats
interference
graph
theory
path
finding
nonrepetitive
repetitive
gene
synthesis
assembly
oligopool
discovery
barcodes
primers
counting
NGS
reads
classifier
classification
regressor
regression
random
forest
LASSO
ridge
homologous
recombination
instability
tuning
efficiency
plasmids
genome
engineering
degenerate
IUPAC
vertex
cover
independent
set
initiation

File:

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Committee Members:

Paul Babitzke, Outside Unit Member
Howard Salis, Chair & Dissertation Advisor
Costas Maranas, Major Field Member
Reka Albert, Outside Field Member
George Perry, Program Head/Chair

Author:

Roitman, Sofia

Title:

The microbiome and coral health: resilience and susceptibility in the face of a changing ocean

Graduate Program:

Biology (PHD)

Keywords:

microbiome
coral reef
NGS
metagenomics
amplicon
sequencing
bioinformatics
bioindicators

File:

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Committee Members:

Stephen Schaeffer, Major Field Member
Carolee Bull, Outside Unit & Field Member
Roberto Iglesias-Prieto, Chair of Committee
Monica Medina, Major Field Member & Dissertation Advisor
Elizabeth Mcgraw, Program Head/Chair

Author:

Manning, Sean Henry

Title:

Exosomal smRNA, a noninvasive biomarker for diagnosis of inflammatory bowel disease

Graduate Program:

Laboratory Animal Medicine

Keywords:

IL-10
Mouse
smRNA
miRNA
NGS
IBD
Colitis
Exosome

File:

Download SMThesisFinal2.pdf

Committee Members:

Tiffany Lynn Whitcomb, Thesis Advisor/Co-Advisor
Yuka Imamura, Committee Member
Gregory Steven Yochum, Committee Member
Hannah Atkins, Committee Member
Ronald Paul Wilson, Program Head/Chair