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Author:

Malys, Tyler

Title:

Microbiome and Epigenetics: Two Keys to the development of Personalized Medicine

Graduate Program:

Integrative Biosciences

Keywords:

Microbiome
Epigenetics
Personalized Medicine
Agriculture
Pathogen Identification
Erythropoiesis
Pakistan
Gene Expression

File:

Download Tyler_draft9April24.pdf

Committee Members:

Cooduvalli S Shashikant, Dissertation Advisor/Co-Advisor
Ross Cameron Hardison, Committee Member
Michael Mugo Mwangi, Committee Member
Matam Vijay Kumar, Committee Member
Peter John Hudson, Special Member

Author:

Bora, Stephanie Andrea

Title:

THE EFFECTS OF THE MICROBIOME IN ENDOCRINE VITAMIN D METABOLISM

Graduate Program:

Immunology and Infectious Diseases

Keywords:

Vitamin D
Biology
Microbiome
physiology
health
immunology
endocrine
antibiotics
metabolism

File:

Download Dissertation_FINAL.pdf

Committee Members:

Margherita Teresa-Anna Cantorna, Dissertation Advisor/Co-Advisor
Margherita Teresa-Anna Cantorna, Committee Chair/Co-Chair
Andrew David Patterson, Committee Member
K. Sandeep Prabhu, Committee Member
Connie J. Rogers, Outside Member

Author:

Schieffer, Kathleen Marie

Title:

Integrative Analysis of the Microbiome and Human Intestinal Transcriptome: Implications for the Pathogenesis of Diverticulitis

Graduate Program:

Biomedical Sciences

Keywords:

RNA-seq
Microbiome
Diverticular disease
Immune system
16S rRNA

File:

Download Schieffer_Final_Thesis.pdf

Committee Members:

Walter Alex Koltun, Dissertation Advisor/Co-Advisor
Walter Alex Koltun, Committee Chair/Co-Chair
Shannon Leanne Kelleher, Committee Member
Gregory Steven Yochum, Committee Member
Regina Lamendella, Outside Member
Matam Vijay Kumar, Committee Member

Author:

Tindall, Alyssa

Title:

Effects of Replacing Saturated Fatty Acids with Walnuts or Vegetable Oils on Central Blood Pressure, Arterial Stiffnecuss Indices, Lipids, Lipoproteins, and the Gut Microbiome in Adults at Risk for Cardiovaslar Disease

Graduate Program:

Nutritional Sciences

Keywords:

Walnuts
Microbiome
Bioactives
Cardiovascular Disease
Hypertension
PUFA

File:

Download Dissertation_-_April_8_2019.pdf

Committee Members:

Penny Margaret Kris-Etherton, Dissertation Advisor/Co-Advisor
Penny Margaret Kris-Etherton, Committee Chair/Co-Chair
Laura E Murray-Kolb, Committee Member
Gregory C Shearer, Committee Member
David Nathan Proctor, Outside Member

Author:

Nichols, Robert

Title:

UNDERSTANDING THE EFFECTS OF ENVIORNMENTAL POLLUTANTS ON THE GUT MICROBIOME

Graduate Program:

Molecular Toxicology

Keywords:

Microbiome
16S sequencing
Metatranscriptoics
AHR
TCDF
Flow Cytometry

File:

Download Robert_Nichols_Thesis.pdf

Committee Members:

Andrew David Patterson, Dissertation Advisor/Co-Advisor
Andrew David Patterson, Committee Chair/Co-Chair
Gary H Perdew, Committee Member
Curtis John Omiecinski, Committee Member
Istvan Albert, Outside Member
Curtis John Omiecinski, Program Head/Chair

Author:

Wang, Hung Li

Title:

Characterization of microbial dynamics and volatile metabolome changes during fermentation of Chambourcin grapes in two Pennsylvania regions

Graduate Program:

Food Science

Keywords:

Wine
Microbiome
Volatile compound
HS-SPME-GC-MS
Chambourcin

File:

Download Master_thesis_HungLi_Wang_071720.pdf

Committee Members:

Josephine Wee, Thesis Advisor/Co-Advisor
Helene Hopfer, Committee Member
Darrell William Cockburn, Committee Member
Robert F Roberts, Program Head/Chair

Author:

Schneider, Andrea

Title:

Innate immunology and microbial diversity in human skin diseases

Graduate Program:

Biomedical Sciences

Keywords:

Skin
Microbiome
Non-Melanoma Skin Cancer
Innate Immunity
Hidradenitis Suppurativa
Acne

File:

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Committee Members:

Amanda Marie Nelson, Dissertation Advisor/Co-Advisor
Amanda Marie Nelson, Committee Chair/Co-Chair
Neil David Christensen, Committee Member
Lisa M Shantz, Committee Member
Todd Schell, Outside Member
Diane M Thiboutot, Committee Chair/Co-Chair
Ralph Lauren Keil, Program Head/Chair
Diane M Thiboutot, Dissertation Advisor/Co-Advisor

Author:

Ehau-Taumaunu, Hanareia

Title:

Microbial interactions in the phyllosphere: from bacterial competition to disease suppression

Graduate Program:

Plant Pathology (PHD)

Keywords:

phyllosphere
disease suppression
microbial communities
bacterial speck
Solanum lycopersicum
Pseudomonas syringae
Microbial ecology
Phyllosphere
Endosphere
Bacteriocin
Tailocin
Disease suppression
Microbiome
Pseudomonas syringae
Plant disease
Microbial competition
Antagonism
Metagenomic assembled genomes
Functional potential
Common bean
Tomato

File:

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Committee Members:

Carolee Bull, Major Field Member
Timothy Miyashiro, Outside Unit & Field Member
Beth Gugino, Major Field Member
Kevin Hockett, Chair & Dissertation Advisor
Maria Del Mar Jimenez Gasco, Major Field Member
Carolee Bull, Program Head/Chair

Author:

Fonseca, Ana Caroline

Title:

A Longitudinal Investigation of Broiler Chickens' Microbiome Using High-Throughput Sequencing

Graduate Program:

Animal Science (MS)

Keywords:

Broiler
Probiotic
Essential oil
Microbiome
Performance.

File:

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Committee Members:

Adele Turzillo, Program Head/Chair
Erika Ganda, Thesis Advisor/Co-Advisor
John Boney, Committee Member
Alberto Gino Lorenzoni Calvo, Committee Member
Francisco Dini Andreote, Committee Member