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Author:

Prothero, Katie Eva

Title:

Identification of a CTCF-independent insulator that delimits X-inactivated from expressed transcripts within the UBA1 gene

Graduate Program:

Biochemistry and Molecular Biology

Keywords:

DNA methylation
X chromosome inactivation
epigenetics

File:

Download Prothero_Thesis_FINAL2.pdf

Committee Members:

Laura Carrel, Dissertation Advisor/Co-Advisor
Laura Carrel, Committee Chair/Co-Chair
Sergei A Grigoryev, Committee Member
Ira Joseph Ropson, Committee Member
Jiyue Xhu, Committee Member

Author:

Robbins, Michael Lawrence

Title:

TISSUE-SPECIFIC PATTERNING SPECIFIED BY A MULTICOPY PERICARP COLOR1 ALLELE IN MAIZE

Graduate Program:

Plant Biology

Keywords:

transposon
maize
enhancer
flavonoid
mosaic
DNA methylation

File:

Download Michael_Robbins_Thesis__submitted_version_.pdf

Committee Members:

Surinder Chopra, Committee Chair/Co-Chair
Kathleen Marie Brown, Committee Member
David Robert Huff, Committee Member
Paula Mc Steen, Committee Member

Author:

Sekhon, Rajandeep Singh

Title:

INVESTIGATION OF MOLECULAR MECHANISMS OF REGULATION OF MAIZE PERICARP COLOR1 BY AN EPIGENETIC MODIFIER UNSTABLE FACTOR FOR ORANGE1

Graduate Program:

Plant Biology

Keywords:

Tandem repeat
DNA methylation
Epigenetics
Gene regulation
Maize
Epiallele

File:

Download Thesis_Rajandeep_Sekhon.pdf

Committee Members:

Surinder Chopra, Committee Chair/Co-Chair
David M Braun, Committee Member
Majid R Foolad, Committee Member
Timothy W Mcnellis, Committee Member

Author:

Abu Bakar, Nur Suhada

Title:

Transgenerational inheritance of epigenetic regulation by Unstable factor for orange1 in maize.

Graduate Program:

Agronomy

Keywords:

epigenetics
DNA methylation
inheritance

File:

Download NurSuhadaCorrectedThesis.pdf

Committee Members:

Surinder Chopra, Thesis Advisor/Co-Advisor
Majid R Foolad, Thesis Advisor/Co-Advisor
Dawn S Luthe, Thesis Advisor/Co-Advisor

Author:

Stahl, Jill

Title:

Genetic, Epigenetic and Chromosomal Domain Influences on Gene Expression from the Inactive X Chromosome

Graduate Program:

Genetics

Keywords:

X chromosome inactivation
X chromosome
gene expression
DNA methylation

File:

Download Stahl_Final_Revision_9-1-13.pdf

Committee Members:

Laura Carrel, Dissertation Advisor/Co-Advisor
Laura Carrel, Committee Chair/Co-Chair
Edward Joseph Gunther, Committee Member
Kristin Ann Eckert, Committee Member
Kent Eugene Vrana, Committee Member

Author:

Cui, Jin

Title:

Insights into the epigenetic regulation of Unstable factor for orange1 in maize

Graduate Program:

Plant Biology

Keywords:

Unstable factor for orange1
Maize genetics
RNA-seq
small-RNA
DNA methylation
alternative splicing

File:

Download Final_submission_JinCui.pdf

Committee Members:

Surinder Chopra, Dissertation Advisor/Co-Advisor
Surinder Chopra, Committee Chair/Co-Chair
Majid R Foolad, Committee Member
Jesse R Lasky, Outside Member
David Robert Huff, Committee Member
Teh-Hui Kao, Program Head/Chair

Author:

Gomez Campo, Kelly

Title:

Physiological ecology and functional genomics of symbiotic corals: The effect of light exposure

Graduate Program:

Biology (PHD)

Keywords:

Symbiotic corals
Photoacclimation
Light-stress
Coral bleaching
Heat-stress
Phenotypic plasticity
DNA methylation
Gene expression
Biological networks

File:

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Committee Members:

Sally Mackenzie, Major Field Member
James Marden, Major Field Member
David Hughes, Outside Unit & Field Member
Roberto Iglesias-Prieto, Major Field Member & Dissertation Advisor
Iliana Baums, Chair of Committee
Elizabeth Mcgraw, Program Head/Chair

Author:

Song, Fan

Title:

Unveiling Structural Variation: Detection, Characterization, Phasing, and Its Role In 3D Genome Reorganization in Cancer

Graduate Program:

Bioinformatics and Genomics (PhD)

Keywords:

Structural Variation
Chromatin Structure
Acute Myeloid Leukemia
Epigenomics
Hi-C
DNA methylation
Histone modification

File:

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Committee Members:

Zhonghua Gao, Major Field Member
Sinisa Dovat, Outside Unit & Field Member
George Perry, Program Head/Chair
Shaun Mahony, Chair & Dissertation Advisor
Ross Hardison, Major Field Member
Feng Yue, Special Member

Author:

Silva Gallardo, Constanza Paulina

Title:

The impact of nicotine exposure and cigarette smoking on gene expression and behavior from a translational perspective

Graduate Program:

Biobehavioral Health (PHD)

Keywords:

gene expression
genomics
smoking
nicotine
translational
cigarette smoking
reduced nicotine-content cigarettes
RNA-Seq
DNA methylation
sex differences

File:

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Committee Members:

Dajiang Liu, Outside Unit Member
David Vandenbergh, Major Field Member
Steven Branstetter, Outside Field Member
Helen Kamens, Chair & Dissertation Advisor
Thomas Gould, Program Head/Chair