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Author:

Venters, Bryan Jacob

Title:

HIGH-RESOLUTION GENOME-WIDE ORGANIZATION OF THE YEAST TRANSCRIPTION MACHINERY

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

ChIP-chip
Tiling microarrays
Pre-initiation complex
Chromatin
Saccharomyces
Mot1

File:

Download 080724_Venters_Thesis.pdf

Committee Members:

Benjamin Franklin Pugh, Committee Chair/Co-Chair
Joseph C. Reese, Committee Member
Ross Cameron Hardison, Committee Member
David Scott Gilmour, Committee Member
Naomi S Altman, Committee Member

Author:

Guelman, Sebastian

Title:

CHARACTERIZATION OF TWO DISTINCT dGCN5-CONTAINING HAT COMPLEXES IN DROSOPHILA

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

histone
HAT
ATAC
dSAGA
Gcn5
Chromatin
Drosophila

File:

Download thesis.pdf

Committee Members:

Jerry L Workman, Committee Chair/Co-Chair
Susan M. Abmayr, Committee Member
Song Tan, Committee Member
Richard W Ordway, Committee Member
David Scott Gilmour, Committee Chair/Co-Chair

Author:

Chakraborty, Sangita Abid

Title:

Construction and characterization of a minichromosome reporter system to study structure-function relationship between gene silencing and chromatin boundaries in Saccharomyces cerevisiae

Graduate Program:

Biochemistry and Molecular Biology

Keywords:

Chromatin
Heterochromatin
Boundary
Barrier
anti-silencer
gene silencing
URA3
601 nucleosome
Minichromosome
Yeast

File:

Download Sangita_Dissertation_Final_eTD_05012012_upload_0786_PDF.pdf

Committee Members:

Sergei A Grigoryev, Dissertation Advisor/Co-Advisor
Sergei A Grigoryev, Committee Chair/Co-Chair
Laura Carrel, Committee Member
Ralph Lauren Keil, Committee Member
Avery August, Committee Member

Author:

Jennings, Matthew James

Title:

Functional Recognition of the Nucleosome by Chromatin Complexes Ran/rcc11 and Lsd1/corest

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

Nucleosome
RCC1
Ran
LSD1
CoREST
Chromatin

File:

Download Matthew_Jennings_Official_Thesis_081115_Revised.pdf

Committee Members:

Song Tan, Dissertation Advisor/Co-Advisor
Benjamin Franklin Pugh, Committee Member
B Tracy Nixon, Committee Member
Tae Hee Lee, Committee Member
Joseph C. Reese, Committee Member

Author:

Schubert, Michael Bruce

Title:

Role of linker DNA length and linker histone occupancy in chromatin compaction

Graduate Program:

Biochemistry and Molecular Biology

Keywords:

Chromatin
chromatin structure
nucleosome
linker histone
analytical ultracentrifugation
electron microscopy
EMANIC

File:

Download Schubert_Michael_-_BCHEM_Thesis.pdf

Committee Members:

Sergei A Grigoryev, Thesis Advisor/Co-Advisor
Laura Carrel, Thesis Advisor/Co-Advisor
Gregory Steven Yochum, Thesis Advisor/Co-Advisor

Author:

Crickard, John B

Title:

A BIOCHEMICAL CHARACTERIZATION OF TRANSCRIPTION ELONGATION FACTORS THAT FACILITATE THE PROCESSIVITY OF RNA POLYMERASE II

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

Transcription Elongation
Spt4/5
RNA Polymerase II
Chromatin
Nucleosome
FACT

File:

Download 060116_Thesis_Final_Draft.pdf

Committee Members:

Joseph C. Reese, Dissertation Advisor/Co-Advisor

Author:

Becker, Abigail Harris

Title:

EPIGENETIC AND GENE EXPRESSION CHANGES MEDIATED BY HISTONE H3 METHYLATION IN ACUTE MYELOID LEUKEMIA

Graduate Program:

Biomedical Sciences

Keywords:

AML
Acute Myeloid Leukemia
Gene Expression
H3K9me2
Histone Methytransferase
G9a
G9a/EHMT2
Chromatin
ChIP-sequencing
Epegentics
LOCKs

File:

Download AbigailHarrisBecker_Thesis.pdf

Committee Members:

Sergei Grigoryev, Thesis Advisor/Co-Advisor
Kristin Eckert, Committee Member
Greg Yochum, Committee Member

Author:

Buckwalter, Jenna Mae

Title:

Role of Linker DNA Conformation and Linker Histone in Regulating Higher-Order Chromatin Folding

Graduate Program:

Genetics

Keywords:

Linker DNA
Nucleosome
Chromatin
Adenine-tracts
Linker histone H1
Chromatin structure

File:

Download Thesis_Final_Version_-_Jenna_M._Buckwalter_4-5-2017.pdf

Committee Members:

Sergei Grigoryev, Dissertation Advisor/Co-Advisor
Sergei Grigoryev, Committee Chair/Co-Chair
Gregory Yochum, Committee Member
Kristin Eckert, Committee Member
Sarah Bronson, Outside Member
Ira Ropson, Committee Member

Author:

Srivastava, Divyanshi

Title:

Computational Methods For Characterizing The Sequence And Chromatin Determinants Of Transcription Factor Binding

Graduate Program:

Bioinformatics and Genomics (PhD)

Keywords:

Transcription Factors
Gene Regulation
Chromatin
Neural Networks
Neural Networks for Biological Sequences
Interpretable Models For DNA Sequences
Protein-DNA Binding

File:

Download Srivastava-Dissertation-Revised-2021-July.pdf

Committee Members:

Frank Pugh, Major Field Member
Shaun Mahony, Chair & Dissertation Advisor
Ross Hardison, Outside Field Member
Daniel Kifer, Outside Unit Member
George Perry, Program Head/Chair

Author:

Espinola Lopez, Jose

Title:

Structural and Biochemical Characterization of Histone Acetyltransferase Complexes on the Nucleosome

Graduate Program:

Molecular, Cellular, and Integrative Biosciences

Keywords:

Nucleosome
Chromatin
cryoEM
Nanobody
Acetyltransferase
HAT

File:

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Committee Members:

Andrey Krasilnikov, Major Field Member
Song Tan, Chair & Dissertation Advisor
Susan Hafenstein, Major Field Member
Tae-Hee Lee, Outside Unit & Field Member
Melissa Rolls, Program Head/Chair