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Author:

Saadatpour Moghaddam, Assieh

Title:

Dynamic Modeling of Biological and Physical Systems

Graduate Program:

Mathematics

Keywords:

Dynamic modeling
Biological networks
Boolean models
Piecewise linear models

File:

Download AssiehSaadatpour_PhD_Dissertation_Final_2012.pdf

Committee Members:

Reka Z Albert, Dissertation Advisor/Co-Advisor
Mark Levi, Dissertation Advisor/Co-Advisor
Reka Z Albert, Committee Chair/Co-Chair
Mark Levi, Committee Chair/Co-Chair
Andrew Leonard Belmonte, Committee Member
Timothy Reluga, Committee Member
John Fricks, Committee Member

Author:

Gan, Xiao

Title:

Understanding Signal Transduction in Biological Systems with Network-Based Dynamic Modeling

Graduate Program:

Physics

Keywords:

Biological networks
Dynamical modeling
attractors
network reduction
Stable motifs
signal transduction

File:

Download Dissertation-XiaoGan.pdf

Committee Members:

Réka Albert, Dissertation Advisor/Co-Advisor
Réka Albert, Committee Chair/Co-Chair
Carina Curto, Committee Member
Dezhe Jin, Committee Member
Costas D. Maranas, Outside Member

Author:

Maheshwari, Parul

Title:

Causal logic in Boolean modeling of biological networks

Graduate Program:

Physics

Keywords:

Boolean networks
Biological networks
Regulatory functions
Signal transduction network
Attractor
Stable Motifs
Network model
Causal logic
Network motifs
Stomata
guard cells
phosphatases
biomodels
short-term memory
reversibility
feedback loops
oscillating attractor
inference
EMT transition
cancer network
plant biology
calcium signaling

File:

Download PM_thesis_v13.pdf

Committee Members:

Reka Z Albert, Dissertation Advisor/Co-Advisor
Reka Z Albert, Committee Chair/Co-Chair
Sarah Mary Assmann, Committee Member
Dezhe Jin, Committee Member
Carina Pamela Curto, Outside Member
Richard Wallace Robinett, Program Head/Chair

Author:

Gomez Campo, Kelly

Title:

Physiological ecology and functional genomics of symbiotic corals: The effect of light exposure

Graduate Program:

Biology

Keywords:

Symbiotic corals
Photoacclimation
Light-stress
Coral bleaching
Heat-stress
Phenotypic plasticity
DNA methylation
Gene expression
Biological networks

File:

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Committee Members:

Sally Mackenzie, Major Field Member
James Marden, Major Field Member
David Hughes, Outside Unit & Field Member
Roberto Iglesias-Prieto, Major Field Member & Dissertation Advisor
Iliana Baums, Chair of Committee
Elizabeth Mcgraw, Program Head/Chair