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Author:

Ahmed, Nabeel

Title:

Physical Bioinformatics Methods to Understand Causes and Consequences of Variable Codon Translation Rates

Graduate Program:

Bioinformatics and Genomics

Keywords:

translation
kinetics
Ribo-Seq
Ribosome profiling
co-translational process

File:

Download Doctoral_Dissertation_Nabeel_Ahmed.pdf

Committee Members:

Edward Patrick O'Brien, Jr., Dissertation Advisor/Co-Advisor
Edward Patrick O'Brien, Jr., Committee Chair/Co-Chair
Istvan Albert, Committee Member
Sarah Mary Assmann, Committee Member
Naomi S Altman, Outside Member

Author:

Klee, Sara

Title:

DIGGING DEEPER INTO THE GENETIC BASIS OF ERWINIA AMYLOVORA VIRULENCE

Graduate Program:

Plant Pathology

Keywords:

Erwinia amylovora
plant pathogen
polysaccharide
virulence
fire blight
translation
auxotrophy

File:

Download Klee_PhD_Dissertation_real_FINAL.pdf

Committee Members:

Timothy W Mcnellis, Dissertation Advisor/Co-Advisor
Timothy W Mcnellis, Committee Chair/Co-Chair
Kari Anne Peter, Committee Member
Seogchan Kang, Committee Member
Gabriele Brigitte Monshausen, Outside Member
Maria Del Mar Jimenez Gasco, Committee Member

Author:

Hossain, Ayaan

Title:

Advanced algorithms for the design and analysis of synthetic genetic parts

Graduate Program:

Bioinformatics and Genomics (PhD)

Keywords:

automated
design
synthetic
genetic
parts
combinatorial
optimization
machine
learning
algorithm
promoter
mRNA
transcription
translation
decay
repression
CRISPR
repeats
interference
graph
theory
path
finding
nonrepetitive
repetitive
gene
synthesis
assembly
oligopool
discovery
barcodes
primers
counting
NGS
reads
classifier
classification
regressor
regression
random
forest
LASSO
ridge
homologous
recombination
instability
tuning
efficiency
plasmids
genome
engineering
degenerate
IUPAC
vertex
cover
independent
set
initiation

File:

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Committee Members:

Paul Babitzke, Outside Unit Member
Howard Salis, Chair & Dissertation Advisor
Costas Maranas, Major Field Member
Reka Albert, Outside Field Member
George Perry, Program Head/Chair

Author:

Lorenz, Beyza

Title:

Travel and Translatio:itinerant Writing Across Ottoman Worlds

Graduate Program:

Comparative Literature

Keywords:

Comparative literature
World Literature
Turkish literature
Ottoman literature
travel writing
translation
translatio
imperialism.

File:

Download Lorenz_BeyzaDissertation_.pdf

Committee Members:

Djelal Kadir, Dissertation Advisor/Co-Advisor
Nergis Erturk Lennon, Dissertation Advisor/Co-Advisor
Djelal Kadir, Committee Chair/Co-Chair
Shuang Shen, Committee Member
Hoda El Shakry, Committee Member
Martina Kolb, Committee Member
M Safa Saraçoğlu, Special Member

Author:

Mandell, Zachary

Title:

MECHANISMS OF INTRINSIC TRANSCRIPTION TERMINATION AND RIBONUCLEOLYTIC DECAY IN Bacillus subtilis

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology (PHD)

Keywords:

transcription
genomics
transcriptomics
RNA biology
translation
Microbiology

File:

Download Electronic_Dissertation.pdf

Committee Members:

Paul Babitzke, Chair & Dissertation Advisor
Istvan Albert, Major Field Member
Timothy Meredith, Outside Field Member
Philip Bevilacqua, Outside Unit Member
Katsuhiko Murakami, Major Field Member
Wendy Hanna-Rose, Program Head/Chair