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Author:

Pandey, Utsav

Title:

Comparative Genomics Provides Insights into Herpesvirus Transmission, Spread, and Virulence

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

Herpes Simplex Virus
Marek's Disease Virus
Bioinformatics
Molecular Biology
Virology
Genomics

File:

Download Utsav_Pandey_PhD_dissertation.pdf

Committee Members:

Moriah Louise Szpara, Dissertation Advisor/Co-Advisor
Moriah Louise Szpara, Committee Chair/Co-Chair
Anthony Paul Schmitt, Committee Member
Istvan Albert, Committee Member
Andrew Fraser Read, Outside Member
Timothy Charles Meredith, Committee Member

Author:

Wafula, Eric

Title:

Computational methods for comparative genomics of non-model species: a case study in the parasitic plant family Orobanchaceae

Graduate Program:

Biology

Keywords:

Computational biology
Evolutionary biology
Bioinformatics
Comparative genomics
Next-generation sequencing
de novo assembly
Genome annotation
Gene expression
Whole genome duplication
Gene duplication
Phylogenomics
Ancestral reconstruction
Transcriptomics
Orthogroups
Gene family evolution
Parasitic plants
Orobanchaceae
Striga

File:

Download Eric_wafula_dissertation_final_submission.pdf

Committee Members:

Claude Walker Depamphilis, Dissertation Advisor/Co-Advisor
James Harold Marden, Committee Chair/Co-Chair
Istvan Albert, Outside Member
Naomi S Altman, Outside Member
Stephen Wade Schaeffer, Program Head/Chair

Author:

Sebastian, Aswathy

Title:

Advancing Genomic and Transcriptomic Knowledge Through Reproducible Bioinformatics Workflows

Graduate Program:

Bioinformatics and Genomics (PhD)

Keywords:

Bioinformatics
Workflows
Genomics
Transcriptomics
Metabarcoding

File:

Download dissertation_AS.pdf

Committee Members:

Andrew Patterson, Major Field Member
Shaun Mahony, Chair of Committee
Istvan Albert, Major Field Member & Dissertation Advisor
Reka Albert, Outside Unit & Field Member
David Koslicki, Program Head/Chair