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Author:

Jiao, Yuannian

Title:

Phylogenomic analysis of ancient genome duplications in the history of plants

Graduate Program:

Plant Biology

Keywords:

Whole genome duplication
Phylogenomics

File:

Download Yuannian_thesis_29AUG.pdf

Committee Members:

Claude Walker Depamphilis, Dissertation Advisor/Co-Advisor
Claude Walker Depamphilis, Committee Chair/Co-Chair
Hong Ma, Committee Member
John Edward Carlson, Committee Member
Webb Colby Miller, Committee Member
Naomi S Altman, Committee Member

Author:

Herr, Joshua Robert

Title:

Soil Microbial Diversity and the Influence on Stress Response in Hybrid Poplar

Graduate Program:

Plant Biology

Keywords:

Microbial Ecology
Populus
Bioenergy
Next-Generation Sequencing
Genomics
Jasmonic Acid Pathway
Stress Response

File:

Download Herr_Dissertation_final.pdf

Committee Members:

John Edward Carlson, Dissertation Advisor/Co-Advisor
Claude Walker Depamphilis, Committee Member
Seogchan Kang, Committee Member
Istvan Albert, Committee Member

Author:

Honaas, Loren Axel

Title:

Tissue specific de novo transcriptomics in the parasitic Orobanchaceae

Graduate Program:

Plant Biology

Keywords:

Orobanchaceae
Laser Microdissection
Expansin
RNA Seq
Illumina
Triphysaria
Orobanche
Striga
de novo assembly

File:

Download Loren_Honaas_dissertation.pdfDownload Appendices.zip

Committee Members:

Claude Walker Depamphilis, Dissertation Advisor/Co-Advisor
Daniel J Cosgrove, Committee Member
Gabriele Brigitte Monshausen, Committee Member
Dawn S Luthe, Special Member
Naomi S Altman, Special Member

Author:

Coruh, Ceyda

Title:

Identification of small RNA producing genes in the moss Physcomitrella patens

Graduate Program:

Plant Biology

Keywords:

Heterochromatic siRNA
microRNA
small RNA
small RNA-seq
dicer
Physcomitrella patens

File:

Download Dissertation_CeydaCoruh_072914.pdf

Committee Members:

Michael Axtell, Dissertation Advisor/Co-Advisor
Michael Axtell, Committee Chair/Co-Chair
Claude Walker Depamphilis, Committee Member
Sarah Mary Assmann, Committee Member
Anton Nekrutenko, Special Member

Author:

Shahid, Saima

Title:

Discovery of endogenous plant small RNAs and their role in trans-species gene regulation

Graduate Program:

Plant Biology

Keywords:

miRNA
siRNA
plant small RNAs
Amborella
Physcomitrella
Triphysaria
Cuscuta
Parasitic plants
trans-species gene regulation

File:

Download Dissertation_Saima_Shahid_final_111717.pdf

Committee Members:

Michael Axtell, Dissertation Advisor/Co-Advisor
Michael Axtell, Committee Chair/Co-Chair
Claude Walker Depamphilis, Committee Member
Gabriele Brigitte Monshausen, Committee Member
Philip C. Bevilacqua, Outside Member

Author:

Wu, Lihua

Title:

Self-Incompatibility in Petunia: Characterization of S-RNase and S-Locus-F-Box Proteins, and Sequence Analyses of the S-Locus Region Containing Their Genes

Graduate Program:

Plant Biology

Keywords:

Self-incompatibility
Petunia inflata
S-RNase
S-locus
S-locus-F-box proteins

File:

Download Video_3-1.aviDownload video_3-2.aviDownload video_3-3.aviDownload video_3-4.aviDownload video_3-5.aviDownload video_3-6.aviDownload video_3-7.aviDownload video_3-8.aviDownload Wu__Lihua_Plant_Biology_Dissertation.pdfDownload Video_3-1.aviDownload video_3-2.aviDownload video_3-3.aviDownload video_3-4.aviDownload video_3-5.aviDownload video_3-6.aviDownload video_3-7.aviDownload video_3-8.avi

Committee Members:

Teh-Hui Kao, Dissertation Advisor/Co-Advisor
Teh-Hui Kao, Committee Chair/Co-Chair
Gabriele Brigitte Monshausen, Committee Member
Claude Walker Depamphilis, Committee Member
Timothy W Mcnellis, Outside Member
Teh-Hui Kao, Program Head/Chair

Author:

Hepler, Nathan Kent

Title:

INSIGHTS INTO THE EVOLUTION OF EXPANSIN FUNCTION USING IN VITRO, IN VIVO, AND PHYLOGENETIC METHODOLOGIES

Graduate Program:

Plant Biology

Keywords:

expansin
plant cell wall
gene family evolution
Spirodela polyrhiza
Zostera marina
Utricularia gibba
CRISPR/Cas9
root hair
in vitro evolution

File:

Download Hepler-dissertation-final.pdf

Committee Members:

Daniel J Cosgrove, Dissertation Advisor/Co-Advisor
Daniel J Cosgrove, Committee Chair/Co-Chair
Michael Axtell, Committee Member
Claude Walker Depamphilis, Committee Member
Yinong Yang, Outside Member
Teh-Hui Kao, Program Head/Chair

Author:

Johnson, Nathan

Title:

Function and maintenance of trans-species small RNAs in the Cuscuta genus of parasitic plants

Graduate Program:

Plant Biology

Keywords:

Small RNAs
Parasitic plants
Small RNA alignment
Trans-species small RNAs
Cuscuta

File:

Download Dissertation_-_v3.2.9_-_final.pdf

Committee Members:

Michael Axtell, Dissertation Advisor/Co-Advisor
Michael Axtell, Committee Chair/Co-Chair
Claude Walker Depamphilis, Committee Member
Gabriele Brigitte Monshausen, Committee Member
Cristina Rosa, Outside Member
Teh-Hui Kao, Program Head/Chair

Author:

Zhang, Huiting

Title:

phylogenetic and functional studies on parasitism genes in Orobanchaceae and Convolulaceae

Graduate Program:

Plant Biology

Keywords:

Parasitic plants
cell wall
phylogenomics
transcriptome
molecular biology
host-induced-gene-silencing

File:

Download Huiting_Zhang_umi_agreement_papersub_submit.pdfDownload CertificateOfCompletion.pdfDownload Huiting_Zhang_Dissertation.pdf

Committee Members:

Claude Walker Depamphilis, Dissertation Advisor/Co-Advisor
Claude Walker Depamphilis, Committee Chair/Co-Chair
Michael Axtell, Committee Member
Charles T Anderson, Committee Member
Yinong Yang, Outside Member
Teh-Hui Kao, Program Head/Chair