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Author:

Khan, Hossain

Title:

Exploring Sequence Architectures at Flanking Regions of Copy Number Variants

Graduate Program:

Bioinformatics and Genomics

Keywords:

CNVs
Structural Variations
Alu elements
L1 LINE elements
Flanking regions of CNVs
Segmental Duplications

File:

Download ThesisWriteup_Final_HossainKhan.pdf

Committee Members:

Santhosh Girirajan, Thesis Advisor/Co-Advisor
Anton Nekrutenko, Committee Member
Yifei Huang, Committee Member
George H Perry, Program Head/Chair

Author:

Nandy, Debmalya

Title:

A 1H-NMR TARGETED FECAL METABOLOMICS STUDY ON CHILDHOOD OBESITY WITHIN THE INSIGHT COHORT

Graduate Program:

Bioinformatics and Genomics

Keywords:

INSIGHT
1H-NMR
Fecal metabolomics
Childhood obesity

File:

Download MSThesis_BG_NandyD_FinalVersion.pdf

Committee Members:

Francesca Chiaromonte, Thesis Advisor/Co-Advisor
Kateryna Dmytrivna Makova, Committee Member
Matthew Logan Reimherr, Committee Member
George H Perry, Program Head/Chair

Author:

Wekhande, Siddarth

Title:

PARALLEL FACTOR CHIP SPIKE-IN DECONVOLUTION

Graduate Program:

Bioinformatics and Genomics

Keywords:

ChIP-seq spike in deconvolution
bioinformatics
ChIP-seq analysis

File:

Download FinalThesis_SiddarthWekhande.pdf

Committee Members:

Shaun Mahony, Thesis Advisor/Co-Advisor
Istvan Albert, Committee Member
Qunhua Li, Committee Member
George H Perry, Program Head/Chair

Author:

Zesati, Natalie

Title:

Predicting Transcription Factor Binding Using Neural Structured Learning

Graduate Program:

Bioinformatics and Genomics

Keywords:

Neural Structured Learning
Convolution Neural Network
NSL
CNN
Transcription Factors

File:

Download ms_thesis_natalieZesati_20201118.pdf

Committee Members:

Shaun Mahony, Thesis Advisor/Co-Advisor
George H Perry, Program Head/Chair
Reka Z Albert, Committee Member

Author:

Cooper, Rachel

Title:

An Enhancer-Based Deep Learning Approach for Studying Viral Regulation

Graduate Program:

Bioinformatics and Genomics

Keywords:

Deep Learning
Bioinformatics
Gene Regulation
Enhancers
Virus
HSV-1

File:

Download RCooper_BGEN_final_masters_thesis.pdf

Committee Members:

Shaun Mahony, Thesis Advisor/Co-Advisor
Moriah Louise Szpara, Committee Member
George H Perry, Program Head/Chair

Author:

Lin, Jui Shan

Title:

Supervised Variant Prioritization and Its Evaluation

Graduate Program:

Bioinformatics and Genomics

Keywords:

Variant Prioritization
Supervised Machine Learning
Mendelian Diseases

File:

Download Thesis_Jui-Shan.pdf

Committee Members:

Yifei Huang, Thesis Advisor/Co-Advisor
George H Perry, Committee Member
Qunhua Li, Committee Member
George H Perry, Program Head/Chair

Author:

Wright, Sage

Title:

The effect of CK2 inhibition on heterochromatin in AML

Graduate Program:

Bioinformatics and Genomics

Keywords:

CK2
AML
Ikaros
CK2 inhibition
heterochromatin
ChIP-Seq
H3K27me3
H3K9me3
Histone H1
HDAC1

File:

Download FinalThesis_SageWright.pdf

Committee Members:

Sinisa Dovat, Thesis Advisor/Co-Advisor
George H Perry, Program Head/Chair
Dhimant Desai, Committee Member
Vladimir S Spiegelman, Committee Member

Author:

Cheng, Yuhuan

Title:

Trans-Ethnic Meta-Analysis on Lipid Exome Sequencing Data

Graduate Program:

Bioinformatics and Genomics

Keywords:

GWAS
trans-ethnic
meta-analysis
lipids
cardiovascular disease
rare variant
whole-exome sequence

File:

Download FinalThesis.pdf

Committee Members:

Dajiang Liu, Thesis Advisor/Co-Advisor
George H Perry, Program Head/Chair
Laura Carrel, Committee Member
Duanping Liao, Committee Member

Author:

Surana, Pallavi

Title:

Naturally occurring variants modify neurodevelopmental phenotypes

Graduate Program:

Bioinformatics and Genomics

Keywords:

16p11.2 deletion
2-hit model
fruit flies
ASD
DGRP

File:

Download Pallavi_Surana_Thesis_2020.pdf

Committee Members:

Santhosh Girirajan, Thesis Advisor/Co-Advisor
George H Perry, Committee Member
Stephen Wade Schaeffer, Committee Member
Yifei Huang, Committee Member
George H Perry, Program Head/Chair