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Open Access

Author:: Venters, Bryan Jacob
Title:: HIGH-RESOLUTION GENOME-WIDE ORGANIZATION OF THE YEAST TRANSCRIPTION MACHINERY
Graduate Program:: Biochemistry, Microbiology, and Molecular Biology
Keywords:: ChIP-chip
Tiling microarrays
Pre-initiation complex
Chromatin
Saccharomyces
Mot1
File:: Download 080724_Venters_Thesis.pdf
Committee Members:: Benjamin Franklin Pugh, Committee Chair/Co-Chair
Joseph C. Reese, Committee Member
Ross Cameron Hardison, Committee Member
David Scott Gilmour, Committee Member
Naomi S Altman, Committee Member

Open Access

Author:: Chitikila, Carmelata
Title:: Genomic, Genetic and Biochemical Characterization of Repression of the TATA-Box Binding Protein
Graduate Program:: Biochemistry, Microbiology, and Molecular Biology
Keywords:: TBP
TAND
transcription
repression
TAFII145
microarray
File:: Download thesis.pdf
Committee Members:: Andrew G Clark, Committee Member
David Scott Gilmour, Committee Member
Esther Siegfried, Committee Member
Robert Allen Schlegel, Committee Member
Benjamin Franklin Pugh, Committee Chair/Co-Chair
Robert T Simpson, Committee Member

Open Access

Author:: Lee, Chanhyo
Title:: GENOME-WIDE ANALYSIS OF NELF: NELF IS LINKED TO PROMOTER PROXIMAL PAUSING THROUGHOUT THE DROSOPHILA GENOME
Graduate Program:: Biochemistry, Microbiology, and Molecular Biology
Keywords:: elongation
transcription
promoter proximal pausing
NELF
GAGA factor
RNA polymerase II
File:: Download ChanhyoLee_dissertation.pdf
Committee Members:: David Scott Gilmour, Committee Chair/Co-Chair
Benjamin Franklin Pugh, Committee Member
Joseph C. Reese, Committee Member
B Tracy Nixon, Committee Member
Pamela Hankey Giblin, Committee Member
Andrew Thomas Henderson, Committee Member
Richard John Frisque, Committee Member

Open Access

Author:: Sermwittayawong, Decha
Title:: MECHANISMS OF THE SAGA COACTIVATOR COMPLEX IN REGULATION OF GENE TRANSCRIPTION
Graduate Program:: Biochemistry, Microbiology, and Molecular Biology
Keywords:: Gcn5
competition
Spt3
TBP
Spt8
SAGA
bromodomain
File:: Download ThesisMaster_071906c.pdf
Committee Members:: Song Tan, Committee Chair/Co-Chair
Jerry L Workman, Committee Member
Benjamin Franklin Pugh, Committee Member
Joseph C. Reese, Committee Member
Robert Paulson, Committee Member
Juliette T J Lecomte, Committee Member

Open Access

Author:: Rhee, Ho Sung
Title:: GENOME-WIDE ORGANIZATION OF TRANSCRIPTION MACHINERY DETECTED AT SINGLE NUCLEOTIDE RESOLUTION
Graduate Program:: Biochemistry, Microbiology, and Molecular Biology
Keywords:: ChIP-seq
genomic binding locations
transcription factors
File:: Download Rhee_Thesis.pdf
Committee Members:: Benjamin Franklin Pugh, Dissertation Advisor/Co-Advisor
Benjamin Franklin Pugh, Committee Chair/Co-Chair
David Scott Gilmour, Committee Member
Stephan Schuster, Committee Member
Istvan Albert, Committee Member
Debashis Ghosh, Committee Member

Open Access

Author:: Kruk, Jennifer Ann
Title:: The Ccr4-Not complex regulates transcription elongation and chromatin modifications
Graduate Program:: Biochemistry, Microbiology, and Molecular Biology
Keywords:: Ccr4-Not
chromatin
transcription
histone methylation
elongation
RNAPII
File:: Download JK_Dissertation_v8.pdf
Committee Members:: Joseph C. Reese, Dissertation Advisor/Co-Advisor
Joseph C. Reese, Committee Chair/Co-Chair
Craig Eugene Cameron, Committee Member
David Scott Gilmour, Committee Member
Benjamin Franklin Pugh, Committee Member
Liwang Cui, Committee Member
Yanming Wang, Committee Member

Open Access

Author:: Irvin, Jordan Davis
Title:: GENOME-WIDE FUNCTIONAL ANALYSIS OF TAF1 AND MOT1, REGULATORS OF THE TATA BOX BINDING PROTEIN IN SACCHAROMYCES CEREVISIAE
Graduate Program:: Biochemistry, Microbiology, and Molecular Biology
Keywords:: TBP
TAF1
MOT1
Transcription
Microarray
File:: Download JordanIrvinThesis2.pdf
Committee Members:: Benjamin Franklin Pugh, Committee Chair/Co-Chair
Song Tan, Committee Member
Richard John Frisque, Committee Member
Jerry L Workman, Committee Member
Blake Peterson, Committee Member

Open Access

Author:: Psathas, James Nicholas
Title:: Analysis of the Histone N-termini in Transcriptional Regulation
Graduate Program:: Biochemistry, Microbiology, and Molecular Biology
Keywords:: chromatin
histone modifications
transcription
H3
H4
Set2
transcription elongation
splicing
transcription termination
methylation
File:: Download JNP_Dissertation_v10.pdf
Committee Members:: Joseph C. Reese, Dissertation Advisor/Co-Advisor
Joseph C. Reese, Committee Chair/Co-Chair
David Scott Gilmour, Committee Member
Benjamin Franklin Pugh, Committee Member
Song Tan, Committee Member
Hong Ma, Committee Member

Open Access

Author:: Huisinga, Kathryn Louise
Title:: GLOBAL REGULATION OF GENE EXPRESSION IN SACCHAROMYCES CEREVISIAE VIA TATA BINDING PROTEIN REGULATORY FACTORS
Graduate Program:: Biochemistry, Microbiology, and Molecular Biology
Keywords:: TATA Binding Protein
transcription
genome-wide profile
microarray
File:: Download Huisinga_thesis_revisions_full_all.pdf
Committee Members:: Benjamin Franklin Pugh, Committee Chair/Co-Chair
Joseph C. Reese, Committee Member
Ross Cameron Hardison, Committee Member
Naomi S Altman, Committee Member

Open Access

Author:: Alldred, Melissa J
Title:: AN INVESTIGATION OF THE DOMAINS OF THE GAMMA TWO SUBUNIT OF GABAA RECEPTORS, GEPHYRIN AND COLLYBISTIN REQUIRED FOR SYNAPTIC LOCALIZATION
Graduate Program:: Biochemistry, Microbiology, and Molecular Biology
Keywords:: GABA-A receptors
gephyrin
collybistin
synaptic localization
File:: Download Mel_PHD_thesis1.pdf
Committee Members:: Bernhard Luscher, Committee Chair/Co-Chair
Graham Hugh Thomas, Committee Member
Douglas Cavener, Committee Member
Randen Patterson, Committee Member
Benjamin Franklin Pugh, Committee Member

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