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Author:

Sarkar, Debolina

Title:

Integrated Modeling of Phototrophic Metabolism Leveraging Multi-Omics Datasets

Graduate Program:

Chemical Engineering (PHD)

Keywords:

flux balance analysis
metabolic engineering
SNPs
poplar
arabidopsis
cyanobacteria
constraints based analysis
optimization

File:

Download Debolina_Sarkar_thesis_040522.pdf

Committee Members:

Andrew Zydney, Major Field Member
Phillip Savage, Major Field Member
Costas Maranas, Chair & Dissertation Advisor
Seong H. Kim, Professor in Charge/Director of Graduate Studies
Sally Mackenzie, Outside Unit & Field Member

Author:

Hossain, Ayaan

Title:

Advanced algorithms for the design and analysis of synthetic genetic parts

Graduate Program:

Bioinformatics and Genomics (PhD)

Keywords:

automated
design
synthetic
genetic
parts
combinatorial
optimization
machine
learning
algorithm
promoter
mRNA
transcription
translation
decay
repression
CRISPR
repeats
interference
graph
theory
path
finding
nonrepetitive
repetitive
gene
synthesis
assembly
oligopool
discovery
barcodes
primers
counting
NGS
reads
classifier
classification
regressor
regression
random
forest
LASSO
ridge
homologous
recombination
instability
tuning
efficiency
plasmids
genome
engineering
degenerate
IUPAC
vertex
cover
independent
set
initiation

File:

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Committee Members:

Paul Babitzke, Outside Unit Member
Howard Salis, Chair & Dissertation Advisor
Costas Maranas, Major Field Member
Reka Albert, Outside Field Member
George Perry, Program Head/Chair