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Author:

Hutton, John

Title:

Extended Safe Contigs in the Face of Incomplete Coverage

Graduate Program:

Computer Science and Engineering

Keywords:

contig assembly
bioinformatics
non-ideal
linear genome

File:

Download hutton_thesis_20180325.pdf

Committee Members:

Paul Medvedev, Thesis Advisor/Co-Advisor

Author:

Li, Weiling

Title:

APPLICATIONS OF CLUSTERING ALGORITHMS TO ENTITY RESOLUTION AND HUMAN GENOME VARIATION

Graduate Program:

Computer Science and Engineering

Keywords:

data mining
clustering
entity resolution
crowdsourcing
polymorphic HERV-K
human genome variation

File:

Download Weiling_Li-Dissertation-v1.pdf

Committee Members:

Raj Acharya, Dissertation Advisor/Co-Advisor
Paul Medvedev, Committee Chair/Co-Chair
Bhuvan Urgaonkar, Committee Member
Wang-Chien Lee, Committee Member
Mary Poss, Outside Member

Author:

Sun, Chen

Title:

Scalable and Accurate Algorithms for Search in Genomic Big Data and Analysis of Genetic Variants

Graduate Program:

Computer Science and Engineering

Keywords:

Algorithm
Big Data
Database
Genomics
Probabilistic Data Structures
Data Mining
Parallel Computing
Bioinformatics
Genetic Variants
SNP
Computational Biology

File:

Download ChenSun_dissertation_v0830.pdf

Committee Members:

Paul Medvedev, Dissertation Advisor/Co-Advisor
Paul Medvedev, Committee Chair/Co-Chair
Daniel Kifer, Committee Member
Kamesh Madduri, Committee Member
Michael Degiorgio, Outside Member

Author:

Rengasamy, Vasudevan

Title:

Engineering high performance workflows for end-to-end acceleration of genomic applications

Graduate Program:

Computer Science and Engineering

Keywords:

Variant detection
Metagenome assembly
Word2Vec
High performance computing

File:

Download vasudevan-dissertation.pdf

Committee Members:

Kamesh Madduri, Dissertation Advisor/Co-Advisor
Kamesh Madduri, Committee Chair/Co-Chair
Mahmut Taylan Kandemir, Committee Member
Paul Medvedev, Committee Member
Santhosh Girirajan, Outside Member
Wang-Chien Lee, Committee Member