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Open Access

Author:: Burgard, Anthony P.
Title:: OPTIMIZATION-BASED FRAMEWORKS FOR THE ANALYSIS AND REDESIGN OF METABOLIC NETWORKS
Graduate Program:: Chemical Engineering
Keywords:: metabolic network
stoichiometric modeling
microbial strain design
File:: Download Thesis_Complete.pdf
Committee Members:: Costas D Maranas, Committee Chair/Co-Chair
Andrew Zydney, Committee Member
Darrell Velegol, Committee Member
Reka Z Albert, Committee Member

Open Access

Author:: Dasika, Madhukar S
Title:: SYSTEMS ENGINEERING BASED APPROACHES FOR BIOLOGICAL NETWORK INFERENCE, ANALYSIS AND REDESIGN
Graduate Program:: Chemical Engineering
Keywords:: gene regulatory networks
signaling networks
Optimization
synthetic biology
File:: Download Dasika_Thesis.pdf
Committee Members:: Costas D Maranas, Committee Chair/Co-Chair
Reka Z Albert, Committee Member
Patrick C Cirino, Committee Member
Antonios Armaou, Committee Member

Open Access

Author:: Zomorrodi, Ali Reza
Title:: Computational tools for genome-scale synthetic lethality analysis and metabolic modeling of microbial communities
Graduate Program:: Chemical Engineering
Keywords:: Metabolic networks
Flux balance analysis
Metabolic Enginnering
Optimization
Systems biology
File:: Download AliRZomorrodi_PhD_Dissertation_Final_2012.pdf
Committee Members:: Costas D Maranas, Dissertation Advisor/Co-Advisor
Costas D Maranas, Committee Chair/Co-Chair
Ali Borhan, Committee Member
Howard M Salis, Committee Member
Reka Z Albert, Committee Member

Open Access

Author:: Saha, Rajib
Title:: Reconstruction and analysis of genome-scale metabolic models of photosynthetic organisms
Graduate Program:: Chemical Engineering
Keywords:: Genome-scale model
Cyanobacteria
Zea mays
Cyanothece sp. ATCC51142
Synechocystis sp. PCC6803
File:: Download Saha_dissertation_0728_final.pdf
Committee Members:: Costas D Maranas, Dissertation Advisor/Co-Advisor
Costas D Maranas, Committee Chair/Co-Chair
Andrew Zydney, Committee Member
Howard M Salis, Committee Member
Reka Z Albert, Committee Member

Open Access

Author:: Dash, Satyakam
Title:: METABOLIC MODELING OF CLOSTRIDIA FOR BIOFUEL PRODUCTION
Graduate Program:: Chemical Engineering
Keywords:: Clostridium thermocellum
Clostridium acetobutylicum
Metabolic engineering
Genome scale metabolic model
Kinetic model
Thermodynamic analysis
File:: Download Dash_Satyakam_thesis.pdf
Committee Members:: Costas D Maranas, Dissertation Advisor/Co-Advisor
Costas D Maranas, Committee Chair/Co-Chair
Reka Z Albert, Committee Member
Andrew Zydney, Committee Member
Phillip E Savage, Outside Member

Open Access

Author:: Halper, Sean
Title:: Design Optimization Algorithms for Synthetic Biology Applications
Graduate Program:: Chemical Engineering
Keywords:: Synthetic Biology
Metabolic Engineering
CRISPR
Design Optimization
Gene Synthesis
File:: Download Halper_Dissertation_Design_Optimization.pdf
Committee Members:: Howard M Salis, Dissertation Advisor/Co-Advisor
Howard M Salis, Committee Chair/Co-Chair
Andrew Zydney, Committee Member
Phillip E Savage, Committee Member
Reka Z Albert, Outside Member
Phillip E Savage, Program Head/Chair

Open Access

Author:: Chowdhury, Ratul
Title:: Computational Redesign Of Channel Proteins, Enzymes, and Antibodies
Graduate Program:: Chemical Engineering
Keywords:: Computational Protein Design
Channel Proteins
Enzyme Engineering
De novo Antibody Design
Integer Optimization
Molecular Mechanics
File:: Download RatulChowdhury_eTD.pdf
Committee Members:: Costas D Maranas, Dissertation Advisor/Co-Advisor
Costas D Maranas, Committee Chair/Co-Chair
Manish Kumar, Committee Member
Michael John Janik, Committee Member
Reka Z Albert, Outside Member
Phillip E Savage, Program Head/Chair

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