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Author:

Ranganathan, Sridhar

Title:

Using Computations to Analyze and Redesign Metabolism

Graduate Program:

Integrative Biosciences

Keywords:

Metabolic Engineering
Optimization

File:

Download Thesis_sridhar_04_18.pdf

Committee Members:

Costas D Maranas, Dissertation Advisor/Co-Advisor
Costas D Maranas, Committee Chair/Co-Chair
Reka Z Albert, Committee Member
Eric Thomas Harvill, Committee Member
Howard M Salis, Committee Member
Cooduvalli S Shashikant, Committee Member

Author:

Sysoeva, Tatyana A

Title:

ASYMMETRY IN THE OLIGOMERIC NTRC1 AAA+ MOTOR: NEW IMPLICATIONS FOR THE MECHANISM

Graduate Program:

Biochemistry, Microbiology, and Molecular Biology

Keywords:

sigma54-dependent transcription
transcription activator
SAXS
NtrC1
AAA+ ATPase
protein motor

File:

Download Sysoeva_TA_thesis.pdf

Committee Members:

B Tracy Nixon, Dissertation Advisor/Co-Advisor
B Tracy Nixon, Committee Chair/Co-Chair
Kathleen Postle, Committee Member
Ming Tien, Committee Member
Hemant P Yennawar, Committee Member
Howard M Salis, Committee Member

Author:

Speer, Michael Arthur

Title:

Development of a Genetically Modified Silage Inoculant for the Biological Pretreatment of Lignocellulosic Biomass

Graduate Program:

Agricultural and Biological Engineering

Keywords:

Silage
Lactobacillus
Biomass
Bioenergy
Digestibility

File:

Download Mike_Speer_Dissertation.pdf

Committee Members:

Thomas Lehman Richard, Dissertation Advisor/Co-Advisor
Thomas Lehman Richard, Committee Chair/Co-Chair
Howard M Salis, Committee Member
Ming Tien, Committee Member
Maryann Victoria Bruns, Committee Member
Patrick C Cirino, Special Member

Author:

Zomorrodi, Ali Reza

Title:

Computational tools for genome-scale synthetic lethality analysis and metabolic modeling of microbial communities

Graduate Program:

Chemical Engineering

Keywords:

Metabolic networks
Flux balance analysis
Metabolic Enginnering
Optimization
Systems biology

File:

Download AliRZomorrodi_PhD_Dissertation_Final_2012.pdf

Committee Members:

Costas D Maranas, Dissertation Advisor/Co-Advisor
Costas D Maranas, Committee Chair/Co-Chair
Ali Borhan, Committee Member
Howard M Salis, Committee Member
Reka Z Albert, Committee Member

Author:

Tian, Tian

Title:

development of a biophysical model of translational coupling to coordinate protein expression

Graduate Program:

Agricultural and Biological Engineering

Keywords:

Translational coupling
Biophysical model
Protein expression
Synthetic biology
Escherichia coli

File:

Download LastThesisFinal.pdf

Committee Members:

Howard M Salis, Thesis Advisor/Co-Advisor

Author:

Chen, Long

Title:

engineering a synthetic replication system to securely store recombinant Dna

Graduate Program:

Agricultural and Biological Engineering

Keywords:

synthetic biology
recombinant DNA
plasmid replication

File:

Download Final_Thesis_Long_2012.pdf

Committee Members:

Howard M Salis, Thesis Advisor/Co-Advisor

Author:

Pantazes, Robert Jeffrey

Title:

The development of computational methods for designing antibodies and other proteins

Graduate Program:

Chemical Engineering

Keywords:

protein
antibody
complementarity determining regions
IPRO
MAPs
de novo protein design

File:

Download RPantazesThesisFinal.pdf

Committee Members:

Costas D Maranas, Dissertation Advisor/Co-Advisor
Costas D Maranas, Committee Chair/Co-Chair
Andrew Zydney, Committee Member
Arthur Mallay Lesk, Special Member
Themis Matsoukas, Committee Member
Howard M Salis, Committee Member

Author:

Zuroff, Trevor Roman

Title:

Engineering a microbial consortium for lignocellulosic biofuel production

Graduate Program:

Chemical Engineering

Keywords:

Lignocellulose
biofuels
Clostridium phytofermentans
cellulose
microbial consortia

File:

Download TRZ_Thesis_7.15.14.pdf

Committee Members:

Wayne Roger Curtis, Dissertation Advisor/Co-Advisor
Howard M Salis, Committee Member
Thomas Keith Wood, Committee Member
Katriona Shea, Committee Member
Manish Kumar, Committee Member

Author:

Saha, Rajib

Title:

Reconstruction and analysis of genome-scale metabolic models of photosynthetic organisms

Graduate Program:

Chemical Engineering

Keywords:

Genome-scale model
Cyanobacteria
Zea mays
Cyanothece sp. ATCC51142
Synechocystis sp. PCC6803

File:

Download Saha_dissertation_0728_final.pdf

Committee Members:

Costas D Maranas, Dissertation Advisor/Co-Advisor
Costas D Maranas, Committee Chair/Co-Chair
Andrew Zydney, Committee Member
Howard M Salis, Committee Member
Reka Z Albert, Committee Member

Author:

Kwan, Brian Wai

Title:

Genetic Basis for Persister Cell Formation

Graduate Program:

Chemical Engineering

Keywords:

persister cells
antibiotic tolerance
toxin/antitoxin system

File:

Download Dissertation_-_Genetic_Basis_for_Persister_Cell_Formation__Brian_Kwan_Final_.pdf

Committee Members:

Thomas Keith Wood, Dissertation Advisor/Co-Advisor
Manish Kumar, Committee Member
Howard M Salis, Committee Member
Stephen John Knabel, Committee Member