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Open Access

Author:: Varshney, Amit
Title:: Optimization and control of multiscale process systems using model reduction: Application to thin-film growth
Graduate Program:: Chemical Engineering
Keywords:: Carleman Linearization
System Identification
Optimization
Dynamic Optimization
Modeling
Multiscale
Stochastic
Model Predictive Control
Receding Horizon Control
Thin film growth
Epitaxy
File:: Download mythesis.pdf
Committee Members:: Antonios Armaou, Committee Chair/Co-Chair
Costas D Maranas, Committee Member
Ali Borhan, Committee Member
Joan Marie Redwing, Committee Member
Andrew Zydney, Committee Member

Open Access

Author:: Dasika, Madhukar S
Title:: SYSTEMS ENGINEERING BASED APPROACHES FOR BIOLOGICAL NETWORK INFERENCE, ANALYSIS AND REDESIGN
Graduate Program:: Chemical Engineering
Keywords:: gene regulatory networks
signaling networks
Optimization
synthetic biology
File:: Download Dasika_Thesis.pdf
Committee Members:: Costas D Maranas, Committee Chair/Co-Chair
Reka Z Albert, Committee Member
Patrick C Cirino, Committee Member
Antonios Armaou, Committee Member

Open Access

Author:: Ranganathan, Sridhar
Title:: Using Computations to Analyze and Redesign Metabolism
Graduate Program:: Integrative Biosciences
Keywords:: Metabolic Engineering
Optimization
File:: Download Thesis_sridhar_04_18.pdf
Committee Members:: Costas D Maranas, Dissertation Advisor/Co-Advisor
Costas D Maranas, Committee Chair/Co-Chair
Reka Z Albert, Committee Member
Eric Thomas Harvill, Committee Member
Howard M Salis, Committee Member
Cooduvalli S Shashikant, Committee Member

Open Access

Author:: Kumar, Vinay
Title:: SYSTEMS BASED OPTIMIZATION APPROACHES TO ANALYZE AND IMPROVE METABOLIC NETWORKS
Graduate Program:: Industrial Engineering
Keywords:: Optimization
systems biology
metabolism
gaps
File:: Download dissertation_final_final_final.pdf
Committee Members:: Dr Costas D Maranas/ Dr Soundar T Kumara, Dissertation Advisor/Co-Advisor
Costas D Maranas, Committee Chair/Co-Chair
Soundar T Kumara, Committee Chair/Co-Chair
James Gregory Ferry, Committee Member
David Arthur Nembhard, Committee Member
Arunachalam Ravindran, Committee Member

Open Access

Author:: Zomorrodi, Ali Reza
Title:: Computational tools for genome-scale synthetic lethality analysis and metabolic modeling of microbial communities
Graduate Program:: Chemical Engineering
Keywords:: Metabolic networks
Flux balance analysis
Metabolic Enginnering
Optimization
Systems biology
File:: Download AliRZomorrodi_PhD_Dissertation_Final_2012.pdf
Committee Members:: Costas D Maranas, Dissertation Advisor/Co-Advisor
Costas D Maranas, Committee Chair/Co-Chair
Ali Borhan, Committee Member
Howard M Salis, Committee Member
Reka Z Albert, Committee Member

Open Access

Author:: Mueller, Thomas J
Title:: Modeling Metabolism and Regulation to Facilitate Strain Characterization and Design
Graduate Program:: Chemical Engineering
Keywords:: Optimization
Cyanobacteria
Systems Biology
Computational Biology
Metabolic Modeling
File:: Download Mueller_thesis_final.pdf
Committee Members:: Costas D Maranas, Dissertation Advisor/Co-Advisor
Costas D Maranas, Committee Chair/Co-Chair
Phillip E Savage, Committee Member
Manish Kumar, Committee Member
James Gregory Ferry, Outside Member

Open Access

Author:: Grisewood, Matthew Jeffery
Title:: Development and Applications of Computational Enzyme Engineering Tools
Graduate Program:: Chemical Engineering
Keywords:: Iterative Protein Redesign and Optimization
IPRO
Computational
Enzyme
Redesign
Methyl-coenzyme M reductase
acyl-ACP thioesterase
Mcr
'TesA
OptZyme
Optimization
beta-glucuronidase
Protein engineering
Specificity
Activity
File:: Download MGrisewood_Dissertation.pdf
Committee Members:: Costas D Maranas, Dissertation Advisor/Co-Advisor
Costas D Maranas, Committee Chair/Co-Chair
Michael John Janik, Committee Member
Howard M Salis, Committee Member
James Gregory Ferry, Outside Member

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